RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 LPCAT2Q7L5N7 544 aa18.04■□□□□ 0.48
VPS53-218ENST00000575207 GPR155Q7Z3F1 870 aa18.04■□□□□ 0.48
VPS53-218ENST00000575207 ELMOD1Q8N336 334 aa18.04■□□□□ 0.48
VPS53-218ENST00000575207 RPLP0P6Q8NHW5 317 aa18.04■□□□□ 0.48
VPS53-218ENST00000575207 ACDQ96AP0 544 aa18.04■□□□□ 0.48
VPS53-218ENST00000575207 JPH2Q9BR39 696 aaPredicted RBP18.04■□□□□ 0.48
VPS53-218ENST00000575207 SH2D3AQ9BRG2 576 aa18.04■□□□□ 0.48
VPS53-218ENST00000575207 CYP4F11Q9HBI6 524 aa18.04■□□□□ 0.48
VPS53-218ENST00000575207 FSCN3Q9NQT6 498 aa18.04■□□□□ 0.48
VPS53-218ENST00000575207 ASAH2Q9NR71 780 aa18.04■□□□□ 0.48
VPS53-218ENST00000575207 CEP72Q9P209 647 aa18.04■□□□□ 0.48
VPS53-218ENST00000575207 KIF26AQ9ULI4 1882 aaPredicted RBP18.03■□□□□ 0.48
VPS53-218ENST00000575207 KNTC1P50748 2209 aa18.03■□□□□ 0.48
VPS53-218ENST00000575207 PCDH15Q96QU1 1955 aa18.03■□□□□ 0.48
VPS53-218ENST00000575207 hCG_1642624A0A1W2PR95 340 aa18.03■□□□□ 0.48
VPS53-218ENST00000575207 TSPAN1O60635 241 aa18.03■□□□□ 0.48
VPS53-218ENST00000575207 DDAH1O94760 285 aa18.03■□□□□ 0.48
VPS53-218ENST00000575207 CFIP05156 583 aa18.03■□□□□ 0.48
VPS53-218ENST00000575207 DRD1P21728 446 aa18.03■□□□□ 0.48
VPS53-218ENST00000575207 CLK2P49760 499 aaKnown RBP18.03■□□□□ 0.48
VPS53-218ENST00000575207 CSRP3P50461 194 aa18.03■□□□□ 0.48
VPS53-218ENST00000575207 SPDYCQ5MJ68 293 aa18.03■□□□□ 0.48
VPS53-218ENST00000575207 HEATR3Q7Z4Q2 680 aa18.03■□□□□ 0.48
VPS53-218ENST00000575207 CMTR1Q8N1G2 835 aaKnown RBP18.03■□□□□ 0.48
VPS53-218ENST00000575207 TSTD1Q8NFU3 115 aa18.03■□□□□ 0.48
VPS53-218ENST00000575207 CEP76Q8TAP6 659 aa18.03■□□□□ 0.48
VPS53-218ENST00000575207 DDX27Q96GQ7 796 aaKnown RBP18.03■□□□□ 0.48
VPS53-218ENST00000575207 CNOT6LQ96LI5 555 aaKnown RBP18.03■□□□□ 0.48
VPS53-218ENST00000575207 FBRSL1Q9HCM7 1045 aaKnown RBP18.03■□□□□ 0.48
VPS53-218ENST00000575207 KLK14Q9P0G3 267 aa18.03■□□□□ 0.48
VPS53-218ENST00000575207 ADAMTS9Q9P2N4 1935 aa18.03■□□□□ 0.48
VPS53-218ENST00000575207 NBPF19A0A087WUL8 3843 aa18.02■□□□□ 0.48
VPS53-218ENST00000575207 ERVH48-1M5A8F1 160 aa18.02■□□□□ 0.48
VPS53-218ENST00000575207 GJB3O75712 270 aa18.02■□□□□ 0.48
VPS53-218ENST00000575207 KRT38O76015 456 aa18.02■□□□□ 0.48
VPS53-218ENST00000575207 ERLIN2O94905 339 aa18.02■□□□□ 0.48
VPS53-218ENST00000575207 SERPINF2P08697 491 aa18.02■□□□□ 0.48
VPS53-218ENST00000575207 SRGAP2CP0DJJ0 459 aa18.02■□□□□ 0.48
VPS53-218ENST00000575207 TRDNQ13061 729 aa18.02■□□□□ 0.48
VPS53-218ENST00000575207 SART3Q15020 963 aaKnown RBP18.02■□□□□ 0.48
VPS53-218ENST00000575207 DUOXA1Q1HG43 343 aa18.02■□□□□ 0.48
VPS53-218ENST00000575207 COLEC12Q5KU26 742 aa18.02■□□□□ 0.48
VPS53-218ENST00000575207 TYW1BQ6NUM6 668 aa18.02■□□□□ 0.48
VPS53-218ENST00000575207 OLIG1Q8TAK6 271 aa18.02■□□□□ 0.48
VPS53-218ENST00000575207 WBP1Q96G27 269 aa18.02■□□□□ 0.48
VPS53-218ENST00000575207 TPCN1Q9ULQ1 816 aa18.02■□□□□ 0.48
VPS53-218ENST00000575207 DPYSL4O14531 572 aa18.01■□□□□ 0.47
VPS53-218ENST00000575207 CBFA2T3O75081 653 aa18.01■□□□□ 0.47
VPS53-218ENST00000575207 DKK1O94907 266 aa18.01■□□□□ 0.47
VPS53-218ENST00000575207 SFNP31947 248 aa18.01■□□□□ 0.47
VPS53-218ENST00000575207 EIF2S3P41091 472 aaKnown RBP18.01■□□□□ 0.47
VPS53-218ENST00000575207 GPIHBP1Q8IV16 184 aa18.01■□□□□ 0.47
VPS53-218ENST00000575207 NAXDQ8IW45 347 aa18.01■□□□□ 0.47
VPS53-218ENST00000575207 ZNF654Q8IZM8 581 aa18.01■□□□□ 0.47
VPS53-218ENST00000575207 PDCD7Q8N8D1 485 aaKnown RBP18.01■□□□□ 0.47
VPS53-218ENST00000575207 IGDCC4Q8TDY8 1250 aa18.01■□□□□ 0.47
VPS53-218ENST00000575207 PRPF31Q8WWY3 499 aaKnown RBP18.01■□□□□ 0.47
VPS53-218ENST00000575207 FNBP1Q96RU3 617 aa18.01■□□□□ 0.47
VPS53-218ENST00000575207 KIF2CQ99661 725 aa18.01■□□□□ 0.47
VPS53-218ENST00000575207 TRIM6Q9C030 488 aaPredicted RBP18.01■□□□□ 0.47
VPS53-218ENST00000575207 RELNP78509 3460 aa18■□□□□ 0.47
VPS53-218ENST00000575207 CREBBPQ92793 2442 aa18■□□□□ 0.47
VPS53-218ENST00000575207 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18■□□□□ 0.47
VPS53-218ENST00000575207 FAM205CA6NFA0 338 aa18■□□□□ 0.47
VPS53-218ENST00000575207 E9PAM4 449 aa18■□□□□ 0.47
VPS53-218ENST00000575207 TMEM189-UBE2V1I3L0A0 370 aa18■□□□□ 0.47
VPS53-218ENST00000575207 ARHGAP33O14559 1287 aa18■□□□□ 0.47
VPS53-218ENST00000575207 SDSP20132 328 aa18■□□□□ 0.47
VPS53-218ENST00000575207 NAB2Q15742 525 aa18■□□□□ 0.47
VPS53-218ENST00000575207 LYSMD4Q5XG99 296 aa18■□□□□ 0.47
VPS53-218ENST00000575207 LRRC69Q6ZNQ3 347 aa18■□□□□ 0.47
VPS53-218ENST00000575207 ARMCX6Q7L4S7 300 aa18■□□□□ 0.47
VPS53-218ENST00000575207 OR2I1PQ8NGU4 316 aa18■□□□□ 0.47
VPS53-218ENST00000575207 BPIFB1Q8TDL5 484 aa18■□□□□ 0.47
VPS53-218ENST00000575207 CPB2Q96IY4 423 aa18■□□□□ 0.47
VPS53-218ENST00000575207 PI4K2AQ9BTU6 479 aa18■□□□□ 0.47
VPS53-218ENST00000575207 LRRC3Q9BY71 257 aa18■□□□□ 0.47
VPS53-218ENST00000575207 DNMT3LQ9UJW3 386 aa18■□□□□ 0.47
VPS53-218ENST00000575207 STK24Q9Y6E0 443 aa18■□□□□ 0.47
VPS53-218ENST00000575207 ATXN2Q99700 1313 aaKnown RBP17.99■□□□□ 0.47
VPS53-218ENST00000575207 A0A1W2PRU2 124 aa17.99■□□□□ 0.47
VPS53-218ENST00000575207 TKTP29401 623 aaKnown RBP17.99■□□□□ 0.47
VPS53-218ENST00000575207 P2RY2P41231 377 aa17.99■□□□□ 0.47
VPS53-218ENST00000575207 GALK1P51570 392 aa17.99■□□□□ 0.47
VPS53-218ENST00000575207 JAK3P52333 1124 aa17.99■□□□□ 0.47
VPS53-218ENST00000575207 NCBP1Q09161 790 aaKnown RBP17.99■□□□□ 0.47
VPS53-218ENST00000575207 LAMTOR4Q0VGL1 99 aa17.99■□□□□ 0.47
VPS53-218ENST00000575207 TPGS2Q68CL5 300 aa17.99■□□□□ 0.47
VPS53-218ENST00000575207 WWC2Q6AWC2 1192 aa17.99■□□□□ 0.47
VPS53-218ENST00000575207 MARCH9Q86YJ5 346 aa17.99■□□□□ 0.47
VPS53-218ENST00000575207 GALNT15Q8N3T1 639 aa17.99■□□□□ 0.47
VPS53-218ENST00000575207 PSPC1Q8WXF1 523 aaKnown RBP17.99■□□□□ 0.47
VPS53-218ENST00000575207 FAM83CQ9BQN1 747 aa17.99■□□□□ 0.47
VPS53-218ENST00000575207 PARP2Q9UGN5 583 aa17.99■□□□□ 0.47
VPS53-218ENST00000575207 TSC2P49815 1807 aa17.98■□□□□ 0.47
VPS53-218ENST00000575207 OTOL1A6NHN0 477 aaPredicted RBP17.98■□□□□ 0.47
VPS53-218ENST00000575207 PTGESO14684 152 aa17.98■□□□□ 0.47
VPS53-218ENST00000575207 ITPKAP23677 461 aa17.98■□□□□ 0.47
VPS53-218ENST00000575207 WEE1P30291 646 aa17.98■□□□□ 0.47
VPS53-218ENST00000575207 ADCY7P51828 1080 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms