RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 CCDC73Q6ZRK6 1079 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 CCDC83Q8IWF9 413 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 IGSF22Q8N9C0 903 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 NAT8LQ8N9F0 302 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 N4BP2L2Q92802 583 aaPredicted RBP7.55□□□□□ -1.2
VPS53-217ENST00000575100 MVB12AQ96EY5 273 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 DHX36Q9H2U1 1008 aaKnown RBP7.55□□□□□ -1.2
VPS53-217ENST00000575100 CBX8Q9HC52 389 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 CCM2LQ9NUG4 571 aaPredicted RBP7.55□□□□□ -1.2
VPS53-217ENST00000575100 CACNA2D2Q9NY47 1150 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 DACT1Q9NYF0 836 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 TMOD2Q9NZR1 351 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 PI4KBQ9UBF8 816 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 MKL2Q9ULH7 1088 aa7.55□□□□□ -1.2
VPS53-217ENST00000575100 COL2A1P02458 1487 aaPredicted RBP7.54□□□□□ -1.2
VPS53-217ENST00000575100 WDR19Q8NEZ3 1342 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 PHIPQ8WWQ0 1821 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 KLF18A0A0U1RQI7 1052 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 BTBD19C9JJ37 291 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 MEN1O00255 615 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 RTCAO00442 366 aaKnown RBP7.54□□□□□ -1.2
VPS53-217ENST00000575100 TADA3O75528 432 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 FGF18O76093 207 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 GDF11O95390 407 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 HLA-DOAP06340 250 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 SLC3A2P08195 630 aaKnown RBP7.54□□□□□ -1.2
VPS53-217ENST00000575100 PCP11498 1178 aaKnown RBP7.54□□□□□ -1.2
VPS53-217ENST00000575100 MYCLP12524 364 aaPredicted RBP7.54□□□□□ -1.2
VPS53-217ENST00000575100 HPDP32754 393 aaPredicted RBP7.54□□□□□ -1.2
VPS53-217ENST00000575100 HSD17B7P56937 341 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 EVCP57679 992 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 CCT2P78371 535 aaKnown RBP7.54□□□□□ -1.2
VPS53-217ENST00000575100 MAP4K2Q12851 820 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 SNAPC2Q13487 334 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 TMEM201Q5SNT2 666 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 KRT74Q7RTS7 529 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 CCDC144CPQ8IYA2 1237 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 LILRB1Q8NHL6 650 aaPredicted RBP7.54□□□□□ -1.2
VPS53-217ENST00000575100 LRTOMTQ8WZ04 291 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 CEP95Q96GE4 821 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 DESI2Q9BSY9 194 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 CYP4F11Q9HBI6 524 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 PGPEP1Q9NXJ5 209 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 WDR35Q9P2L0 1181 aa7.54□□□□□ -1.2
VPS53-217ENST00000575100 MAGED2Q9UNF1 606 aaPredicted RBP7.54□□□□□ -1.2
VPS53-217ENST00000575100 A0A1W2PPH5 198 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 FFAR2O15552 330 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 IRAK2O43187 625 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 SASH3O75995 380 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 CTDNEP1O95476 244 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 B3GALT4O96024 378 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 NR3C2P08235 984 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 RPL17P18621 184 aaKnown RBP7.53□□□□□ -1.2
VPS53-217ENST00000575100 GUCY1A2P33402 732 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 MCM2P49736 904 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 UBASH3AP57075 661 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 PPATQ06203 517 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 PPP2R5BQ15173 497 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 ANKRD1Q15327 319 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 CNN3Q15417 329 aaKnown RBP7.53□□□□□ -1.2
VPS53-217ENST00000575100 SF1Q15637 639 aaKnown RBP7.53□□□□□ -1.2
VPS53-217ENST00000575100 DCAF15Q66K64 600 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 SLC30A6Q6NXT4 461 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 APOA5Q6Q788 366 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 C17orf99Q6UX52 265 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 PDZD3Q86UT5 571 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 SGMS1Q86VZ5 419 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 IQCA1Q86XH1 822 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 ZNF444Q8N0Y2 327 aaPredicted RBP7.53□□□□□ -1.2
VPS53-217ENST00000575100 CRACR2BQ8N4Y2 399 aaPredicted RBP7.53□□□□□ -1.2
VPS53-217ENST00000575100 FGD4Q96M96 766 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 ARHGAP39Q9C0H5 1083 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 BTBD1Q9H0C5 482 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 JMJD4Q9H9V9 463 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 MTRRQ9UBK8 725 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 KCNH4Q9UQ05 1017 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 DOCK1Q14185 1865 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 IGKV6D-41A0A0C4DH26 115 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 GOLGA8BA8MQT2 603 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 H0Y3Z8 333 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 DOK2O60496 412 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 JAK2O60674 1132 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 SKAP2O75563 359 aaPredicted RBP7.53□□□□□ -1.2
VPS53-217ENST00000575100 HSPA4LO95757 839 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 TP53P04637 393 aaPredicted RBP7.53□□□□□ -1.2
VPS53-217ENST00000575100 PARP1P09874 1014 aaKnown RBP7.53□□□□□ -1.2
VPS53-217ENST00000575100 NAT1P18440 290 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 MECP2P51608 486 aaKnown RBP7.53□□□□□ -1.2
VPS53-217ENST00000575100 GFRA1P56159 465 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 PKP1Q13835 747 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 TRIM29Q14134 588 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 STARD3Q14849 445 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 WTAPQ15007 396 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 ANO6Q4KMQ2 910 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 VARS2Q5ST30 1063 aaKnown RBP7.53□□□□□ -1.2
VPS53-217ENST00000575100 TDRD10Q5VZ19 366 aaKnown RBP7.53□□□□□ -1.2
VPS53-217ENST00000575100 USP45Q70EL2 814 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 MICU3Q86XE3 530 aa7.53□□□□□ -1.2
VPS53-217ENST00000575100 FOXP4Q8IVH2 680 aaPredicted RBP7.53□□□□□ -1.2
VPS53-217ENST00000575100 TMEM192Q8IY95 271 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms