RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-213	ENST00000573166	DARS	P14868	501 aa	Known RBP	10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	ARF4	P18085	180 aa	Predicted RBP	10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	VPS41	P49754	854 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	DMTN	Q08495	405 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	NCAPH	Q15003	741 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	SNX17	Q15036	470 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	ARL13B	Q3SXY8	428 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	SPOPL	Q6IQ16	392 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	RFX6	Q8HWS3	928 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	C18orf8	Q96DM3	657 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	ACO2	Q99798	780 aa	Known RBP	10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	TMEM117	Q9H0C3	514 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	STAP1	Q9ULZ2	295 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	DAAM1	Q9Y4D1	1078 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	COL24A1	Q17RW2	1714 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	AMH	P03971	560 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	GYPC	P04921	128 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	CCL5	P13501	91 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	BMP6	P22004	513 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	BCAR1	P56945	870 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	ORC1	Q13415	861 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	PCBP1	Q15365	356 aa	Known RBP eCLIP	10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	PPP6R3	Q5H9R7	873 aa	Predicted RBP	10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	SLC35C1	Q96A29	364 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	EPC1	Q9H2F5	836 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	ZNF148	Q9UQR1	794 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	UTP11	Q9Y3A2	253 aa	Known RBP	10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	COMMD10	Q9Y6G5	202 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	FOXN3	O00409	490 aa	Predicted RBP	10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	HSPA6	P17066	643 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	LBX1	P52954	281 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	MKRN4P	Q13434	485 aa	Predicted RBP	10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	KCTD6	Q8NC69	237 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	CPA5	Q8WXQ8	436 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	ZWILCH	Q9H900	591 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	ARFGAP3	Q9NP61	516 aa		10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	TRMT13	Q9NUP7	481 aa	Known RBP	10.75	□□□□□ -0.69
SMG6-213	ENST00000573166	ABI2	Q9NYB9	513 aa	Predicted RBP	10.75	□□□□□ -0.69
SMG6-213	ENST00000573166		H7C0C1	242 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	CNMD	O75829	334 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	CALR	P27797	417 aa	Known RBP	10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	CXCR5	P32302	372 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	ATP5O	P48047	213 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	SCNN1G	P51170	649 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	PSMD6	Q15008	389 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	BTBD8	Q5XKL5	378 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	JADE1	Q6IE81	842 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	TMC7	Q7Z402	723 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	AFAP1L1	Q8TED9	768 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	BSND	Q8WZ55	320 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	CCDC77	Q9BR77	488 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	XPNPEP1	Q9NQW7	623 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	HAUS2	Q9NVX0	235 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166		Q9Y3F1	56 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	TIMM13	Q9Y5L4	95 aa	Predicted RBP	10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	MLH1	P40692	756 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	GUCY2F	P51841	1108 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	NCKAP1L	P55160	1127 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	DYNLT1	P63172	113 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	SPIRE1	Q08AE8	756 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	MTF1	Q14872	753 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	C4orf50	Q6ZRC1	276 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	ACOT1	Q86TX2	421 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	CEP120	Q8N960	986 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	USP38	Q8NB14	1042 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	HAUS1	Q96CS2	278 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	NUP85	Q9BW27	656 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	FTHL17	Q9BXU8	183 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	WRAP73	Q9P2S5	460 aa	Predicted RBP	10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	SART1	O43290	800 aa	Known RBP	10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	BRD2	P25440	801 aa	Known RBP	10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	DRP2	Q13474	957 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	BSPRY	Q5W0U4	402 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	UBA3	Q8TBC4	463 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	ZNF564	Q8TBZ8	553 aa	Predicted RBP	10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	UNC93B1	Q9H1C4	597 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	TRPV6	Q9H1D0	765 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	ASNSD1	Q9NWL6	643 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	SEPT10	Q9P0V9	454 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	PCSK1N	Q9UHG2	260 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	CPSF3	Q9UKF6	684 aa	Known RBP	10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	ITGA11	Q9UKX5	1188 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	PCDHB12	Q9Y5F1	795 aa		10.74	□□□□□ -0.69
SMG6-213	ENST00000573166	EIF3CL	B5ME19	914 aa	Known RBP	10.73	□□□□□ -0.69
SMG6-213	ENST00000573166	MYZAP	P0CAP1	466 aa		10.73	□□□□□ -0.69
SMG6-213	ENST00000573166	SELP	P16109	830 aa		10.73	□□□□□ -0.69
SMG6-213	ENST00000573166	DNAJB2	P25686	324 aa		10.73	□□□□□ -0.69
SMG6-213	ENST00000573166	ATP11A	P98196	1134 aa		10.73	□□□□□ -0.69
SMG6-213	ENST00000573166	CCNY	Q8ND76	341 aa		10.73	□□□□□ -0.69
SMG6-213	ENST00000573166	ELMO3	Q96BJ8	720 aa		10.73	□□□□□ -0.69
SMG6-213	ENST00000573166	HHIPL1	Q96JK4	782 aa		10.73	□□□□□ -0.69
SMG6-213	ENST00000573166	EIF3C	Q99613	913 aa	Known RBP	10.73	□□□□□ -0.69
SMG6-213	ENST00000573166	MRPL9	Q9BYD2	267 aa	Known RBP	10.73	□□□□□ -0.69
SMG6-213	ENST00000573166	IKZF4	Q9H2S9	585 aa		10.73	□□□□□ -0.69
SMG6-213	ENST00000573166	PLCB1	Q9NQ66	1216 aa		10.73	□□□□□ -0.69
SMG6-213	ENST00000573166	PADI3	Q9ULW8	664 aa		10.73	□□□□□ -0.69
SMG6-213	ENST00000573166	JRKL	Q9Y4A0	524 aa		10.73	□□□□□ -0.69
SMG6-213	ENST00000573166	ASTN1	O14525	1302 aa		10.73	□□□□□ -0.69
SMG6-213	ENST00000573166	DPYSL4	O14531	572 aa		10.73	□□□□□ -0.69
SMG6-213	ENST00000573166	ZBTB24	O43167	697 aa	Predicted RBP	10.73	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms