RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 RPGRIP1Q96KN7 1286 aa8.83□□□□□ -1
VPS53-214ENST00000572607 PPP1R10Q96QC0 940 aaKnown RBP8.83□□□□□ -1
VPS53-214ENST00000572607 PYM1Q9BRP8 204 aaKnown RBP8.83□□□□□ -1
VPS53-214ENST00000572607 TTPALQ9BTX7 342 aa8.83□□□□□ -1
VPS53-214ENST00000572607 MSTO1Q9BUK6 570 aa8.83□□□□□ -1
VPS53-214ENST00000572607 TNMDQ9H2S6 317 aa8.83□□□□□ -1
VPS53-214ENST00000572607 ADAM7Q9H2U9 754 aa8.83□□□□□ -1
VPS53-214ENST00000572607 ST6GALNAC4Q9H4F1 302 aa8.83□□□□□ -1
VPS53-214ENST00000572607 MRPL44Q9H9J2 332 aaKnown RBP8.83□□□□□ -1
VPS53-214ENST00000572607 PLEKHA5Q9HAU0 1116 aa8.83□□□□□ -1
VPS53-214ENST00000572607 MAGEF1Q9HAY2 307 aa8.83□□□□□ -1
VPS53-214ENST00000572607 CHST7Q9NS84 486 aa8.83□□□□□ -1
VPS53-214ENST00000572607 NR2E1Q9Y466 385 aa8.83□□□□□ -1
VPS53-214ENST00000572607 NUB1Q9Y5A7 615 aa8.83□□□□□ -1
VPS53-214ENST00000572607 MYMKA6NI61 221 aa8.82□□□□□ -1
VPS53-214ENST00000572607 F8W810 466 aa8.82□□□□□ -1
VPS53-214ENST00000572607 PODXLO00592 558 aa8.82□□□□□ -1
VPS53-214ENST00000572607 ABLIM1O14639 778 aa8.82□□□□□ -1
VPS53-214ENST00000572607 OGTO15294 1046 aa8.82□□□□□ -1
VPS53-214ENST00000572607 TEX28O15482 410 aa8.82□□□□□ -1
VPS53-214ENST00000572607 LILRB3O75022 631 aa8.82□□□□□ -1
VPS53-214ENST00000572607 GCNT3O95395 438 aa8.82□□□□□ -1
VPS53-214ENST00000572607 C1RP00736 705 aa8.82□□□□□ -1
VPS53-214ENST00000572607 KCNE1P15382 129 aa8.82□□□□□ -1
VPS53-214ENST00000572607 RPL9P32969 192 aaKnown RBP8.82□□□□□ -1
VPS53-214ENST00000572607 CLCN4P51793 760 aa8.82□□□□□ -1
VPS53-214ENST00000572607 CLCNKBP51801 687 aa8.82□□□□□ -1
VPS53-214ENST00000572607 KRT85P78386 507 aa8.82□□□□□ -1
VPS53-214ENST00000572607 GTF2BQ00403 316 aa8.82□□□□□ -1
VPS53-214ENST00000572607 DNM1Q05193 864 aaKnown RBP8.82□□□□□ -1
VPS53-214ENST00000572607 ALCAMQ13740 583 aa8.82□□□□□ -1
VPS53-214ENST00000572607 NAB2Q15742 525 aa8.82□□□□□ -1
VPS53-214ENST00000572607 PSMD5Q16401 504 aa8.82□□□□□ -1
VPS53-214ENST00000572607 XKR4Q5GH76 650 aa8.82□□□□□ -1
VPS53-214ENST00000572607 HERC4Q5GLZ8 1057 aaPredicted RBP8.82□□□□□ -1
VPS53-214ENST00000572607 PLA2G2CQ5R387 149 aa8.82□□□□□ -1
VPS53-214ENST00000572607 LIN9Q5TKA1 542 aa8.82□□□□□ -1
VPS53-214ENST00000572607 KIAA0319Q5VV43 1072 aa8.82□□□□□ -1
VPS53-214ENST00000572607 ADALQ6DHV7 355 aa8.82□□□□□ -1
VPS53-214ENST00000572607 SFR1Q86XK3 245 aa8.82□□□□□ -1
VPS53-214ENST00000572607 CD302Q8IX05 232 aa8.82□□□□□ -1
VPS53-214ENST00000572607 SYCP3Q8IZU3 236 aa8.82□□□□□ -1
VPS53-214ENST00000572607 HDAC7Q8WUI4 952 aa8.82□□□□□ -1
VPS53-214ENST00000572607 SUSD6Q92537 303 aa8.82□□□□□ -1
VPS53-214ENST00000572607 DHX58Q96C10 678 aa8.82□□□□□ -1
VPS53-214ENST00000572607 B3GALT6Q96L58 329 aa8.82□□□□□ -1
VPS53-214ENST00000572607 TSPAN18Q96SJ8 248 aa8.82□□□□□ -1
VPS53-214ENST00000572607 PAAF1Q9BRP4 392 aa8.82□□□□□ -1
VPS53-214ENST00000572607 GPR62Q9BZJ7 368 aa8.82□□□□□ -1
VPS53-214ENST00000572607 S1PR5Q9H228 398 aa8.82□□□□□ -1
VPS53-214ENST00000572607 RPF1Q9H9Y2 349 aaKnown RBP8.82□□□□□ -1
VPS53-214ENST00000572607 RXFP1Q9HBX9 757 aa8.82□□□□□ -1
VPS53-214ENST00000572607 MAN1C1Q9NR34 630 aa8.82□□□□□ -1
VPS53-214ENST00000572607 CNTN3Q9P232 1028 aa8.82□□□□□ -1
VPS53-214ENST00000572607 FNIP2Q9P278 1114 aa8.82□□□□□ -1
VPS53-214ENST00000572607 CACNG4Q9UBN1 327 aa8.82□□□□□ -1
VPS53-214ENST00000572607 MUTYHQ9UIF7 546 aa8.82□□□□□ -1
VPS53-214ENST00000572607 SPTBN4Q9H254 2564 aa8.81□□□□□ -1
VPS53-214ENST00000572607 TULP1O00294 542 aaPredicted RBP8.81□□□□□ -1
VPS53-214ENST00000572607 EFEMP2O95967 443 aa8.81□□□□□ -1
VPS53-214ENST00000572607 CXCL8P10145 99 aa8.81□□□□□ -1
VPS53-214ENST00000572607 CYP3A5P20815 502 aa8.81□□□□□ -1
VPS53-214ENST00000572607 MCM4P33991 863 aa8.81□□□□□ -1
VPS53-214ENST00000572607 TCF15Q12870 199 aa8.81□□□□□ -1
VPS53-214ENST00000572607 POSTNQ15063 836 aa8.81□□□□□ -1
VPS53-214ENST00000572607 UPP1Q16831 310 aa8.81□□□□□ -1
VPS53-214ENST00000572607 SLC10A6Q3KNW5 377 aa8.81□□□□□ -1
VPS53-214ENST00000572607 SEZ6Q53EL9 994 aa8.81□□□□□ -1
VPS53-214ENST00000572607 ZC2HC1CQ53FD0 456 aaPredicted RBP8.81□□□□□ -1
VPS53-214ENST00000572607 RTP2Q5QGT7 225 aa8.81□□□□□ -1
VPS53-214ENST00000572607 ALKAL1Q6UXT8 129 aa8.81□□□□□ -1
VPS53-214ENST00000572607 TMC5Q6UXY8 1006 aa8.81□□□□□ -1
VPS53-214ENST00000572607 CYP26C1Q6V0L0 522 aa8.81□□□□□ -1
VPS53-214ENST00000572607 ZNF720Q7Z2F6 126 aa8.81□□□□□ -1
VPS53-214ENST00000572607 PALB2Q86YC2 1186 aa8.81□□□□□ -1
VPS53-214ENST00000572607 GLYCTKQ8IVS8 523 aa8.81□□□□□ -1
VPS53-214ENST00000572607 C12orf76Q8N812 135 aaPredicted RBP8.81□□□□□ -1
VPS53-214ENST00000572607 TDRD5Q8NAT2 981 aaKnown RBP8.81□□□□□ -1
VPS53-214ENST00000572607 BEST2Q8NFU1 509 aa8.81□□□□□ -1
VPS53-214ENST00000572607 PIK3R5Q8WYR1 880 aa8.81□□□□□ -1
VPS53-214ENST00000572607 POMGNT1Q8WZA1 660 aa8.81□□□□□ -1
VPS53-214ENST00000572607 ZMAT2Q96NC0 199 aaKnown RBP8.81□□□□□ -1
VPS53-214ENST00000572607 ACCSQ96QU6 501 aa8.81□□□□□ -1
VPS53-214ENST00000572607 SPSB2Q99619 263 aa8.81□□□□□ -1
VPS53-214ENST00000572607 CXCL16Q9H2A7 254 aa8.81□□□□□ -1
VPS53-214ENST00000572607 PLEKHA4Q9H4M7 779 aa8.81□□□□□ -1
VPS53-214ENST00000572607 TMEM206Q9H813 350 aa8.81□□□□□ -1
VPS53-214ENST00000572607 PIDD1Q9HB75 910 aa8.81□□□□□ -1
VPS53-214ENST00000572607 GOLGA2P5Q9HBQ8 144 aa8.81□□□□□ -1
VPS53-214ENST00000572607 OLFML3Q9NRN5 406 aa8.81□□□□□ -1
VPS53-214ENST00000572607 PANK4Q9NVE7 773 aa8.81□□□□□ -1
VPS53-214ENST00000572607 TBC1D7Q9P0N9 293 aa8.81□□□□□ -1
VPS53-214ENST00000572607 UBQLN1Q9UMX0 589 aaKnown RBP8.81□□□□□ -1
VPS53-214ENST00000572607 A0A0B4J269 797 aa8.8□□□□□ -1
VPS53-214ENST00000572607 LOC730098B7Z3J9 87 aa8.8□□□□□ -1
VPS53-214ENST00000572607 H7C4K7 107 aa8.8□□□□□ -1
VPS53-214ENST00000572607 SYN3O14994 580 aa8.8□□□□□ -1
VPS53-214ENST00000572607 TGM5O43548 720 aa8.8□□□□□ -1
VPS53-214ENST00000572607 RPL17P18621 184 aaKnown RBP8.8□□□□□ -1
VPS53-214ENST00000572607 ASIC1P78348 528 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms