RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 PTPN18Q99952 460 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 NCAPGQ9BPX3 1015 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 HTATIP2Q9BUP3 242 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 BRD7Q9NPI1 651 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 OLA1Q9NTK5 396 aaKnown RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 IGSF9Q9P2J2 1179 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 CGGBP1Q9UFW8 167 aaPredicted RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 SRP68Q9UHB9 627 aaKnown RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 NAGPAQ9UK23 515 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 ADAM30Q9UKF2 790 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 SLC13A4Q9UKG4 626 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 PADI4Q9UM07 663 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 COG5Q9UP83 839 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 SCAF8Q9UPN6 1271 aaKnown RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 ZNF711Q9Y462 761 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 GPR45Q9Y5Y3 372 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 ATP23Q9Y6H3 246 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 SPTBN2O15020 2390 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 ANKRD17O75179 2603 aaKnown RBP3.38□□□□□ -1.87
VPS35-209ENST00000568642 INSRP06213 1382 aa3.38□□□□□ -1.87
VPS35-209ENST00000568642 NSD3Q9BZ95 1437 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 ABCA12Q86UK0 2595 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 TJP1Q07157 1748 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 CEP250Q9BV73 2442 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 A0A0B4J269 797 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 GOLGA6L3A6NEY3 463 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 POM121BA6NF01 834 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 WTIPA6NIX2 430 aaPredicted RBP3.37□□□□□ -1.87
VPS35-209ENST00000568642 TSPY2A6NKD2 308 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 GOLGA8AA7E2F4 631 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 GOLGA8BA8MQT2 603 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 B8ZZF3 427 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 UBE2CO00762 179 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 HTRA2O43464 458 aaPredicted RBP3.37□□□□□ -1.87
VPS35-209ENST00000568642 GAS7O60861 476 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 APBB3O95704 486 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 TSPY3P0CV98 308 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 TSPY8P0CW00 308 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 RARBP10826 455 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 FOSL2P15408 326 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 PORP16435 677 aaPredicted RBP3.37□□□□□ -1.87
VPS35-209ENST00000568642 GRK2P25098 689 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 HMGB2P26583 209 aaKnown RBP3.37□□□□□ -1.87
VPS35-209ENST00000568642 HPDP32754 393 aaPredicted RBP3.37□□□□□ -1.87
VPS35-209ENST00000568642 ACSL1P33121 698 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 KIF5BP33176 963 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 PPP5CP53041 499 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 YBEYP58557 167 aaPredicted RBP3.37□□□□□ -1.87
VPS35-209ENST00000568642 UBXN2AP68543 259 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 PLIN5Q00G26 463 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 TSPY1Q01534 308 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 PLAURQ03405 335 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 PPP2R3AQ06190 1150 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 DDR1Q08345 913 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 HYAL2Q12891 473 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 CCINQ13939 588 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 PRKG1Q13976 671 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 EFR3AQ14156 821 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 PDE3AQ14432 1141 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 KRT32Q14532 448 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 PPP2R5DQ14738 602 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 WSCD2Q2TBF2 565 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 PGS1Q32NB8 556 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 BBS9Q3SYG4 887 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 MMEL1Q495T6 779 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 SETMARQ53H47 684 aaPredicted RBP3.37□□□□□ -1.87
VPS35-209ENST00000568642 KRTCAP3Q53RY4 240 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 SNX30Q5VWJ9 437 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 ESRP1Q6NXG1 681 aaKnown RBP3.37□□□□□ -1.87
VPS35-209ENST00000568642 PGBD2Q6P3X8 592 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 INTS5Q6P9B9 1019 aaKnown RBP3.37□□□□□ -1.87
VPS35-209ENST00000568642 TMCO3Q6UWJ1 677 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 FBXO11Q86XK2 927 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 VSIG1Q86XK7 387 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 MCATQ8IVS2 390 aaKnown RBP3.37□□□□□ -1.87
VPS35-209ENST00000568642 SYTL1Q8IYJ3 562 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 CEP57L1Q8IYX8 460 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 TDHQ8IZJ6 230 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 GALNT15Q8N3T1 639 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 TSPYL6Q8N831 410 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 ZNF610Q8N9Z0 462 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 ATG16L2Q8NAA4 619 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 ZNF527Q8NB42 609 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 IL31RAQ8NI17 732 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 ADAMTS15Q8TE58 950 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 DCAF4Q8WV16 495 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 ATP6V1E2Q96A05 226 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 SYTL4Q96C24 671 aaPredicted RBP3.37□□□□□ -1.87
VPS35-209ENST00000568642 CEP95Q96GE4 821 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 ZSCAN31Q96LW9 406 aaPredicted RBP3.37□□□□□ -1.87
VPS35-209ENST00000568642 FBXL18Q96ME1 805 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 ELF4Q99607 663 aaPredicted RBP3.37□□□□□ -1.87
VPS35-209ENST00000568642 SLF1Q9BQI6 1058 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 ADAM19Q9H013 955 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 C2orf40Q9H1Z8 148 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 DHX36Q9H2U1 1008 aaKnown RBP3.37□□□□□ -1.87
VPS35-209ENST00000568642 SEMA4AQ9H3S1 761 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 CCDC86Q9H6F5 360 aaKnown RBP3.37□□□□□ -1.87
VPS35-209ENST00000568642 ACAD9Q9H845 621 aa3.37□□□□□ -1.87
VPS35-209ENST00000568642 ZMAT3Q9HA38 289 aaKnown RBP3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms