RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 KCTD17Q8N5Z5 321 aa12.41□□□□□ -0.42
CLN3-226ENST00000567160 C12orf50Q8NA57 414 aaPredicted RBP12.41□□□□□ -0.42
CLN3-226ENST00000567160 DNASE1L2Q92874 299 aa12.41□□□□□ -0.42
CLN3-226ENST00000567160 RUSC1Q9BVN2 902 aa12.41□□□□□ -0.42
CLN3-226ENST00000567160 CUEDC2Q9H467 287 aa12.41□□□□□ -0.42
CLN3-226ENST00000567160 HEBP1Q9NRV9 189 aa12.41□□□□□ -0.42
CLN3-226ENST00000567160 AGPAT5Q9NUQ2 364 aa12.41□□□□□ -0.42
CLN3-226ENST00000567160 NPHP3-ACAD11A0A0J9YXS1 232 aa12.4□□□□□ -0.42
CLN3-226ENST00000567160 TMEM8BA6NDV4 472 aa12.4□□□□□ -0.42
CLN3-226ENST00000567160 ECI2O75521 394 aa12.4□□□□□ -0.42
CLN3-226ENST00000567160 EFEMP2O95967 443 aa12.4□□□□□ -0.42
CLN3-226ENST00000567160 KRT18P05783 430 aaKnown RBP12.4□□□□□ -0.42
CLN3-226ENST00000567160 CASP1P29466 404 aa12.4□□□□□ -0.42
CLN3-226ENST00000567160 AFF1P51825 1210 aaKnown RBP12.4□□□□□ -0.42
CLN3-226ENST00000567160 FZD5Q13467 585 aa12.4□□□□□ -0.42
CLN3-226ENST00000567160 DRP2Q13474 957 aa12.4□□□□□ -0.42
CLN3-226ENST00000567160 MAEAQ7L5Y9 396 aa12.4□□□□□ -0.42
CLN3-226ENST00000567160 DYMQ7RTS9 669 aa12.4□□□□□ -0.42
CLN3-226ENST00000567160 SYT2Q8N9I0 419 aaPredicted RBP12.4□□□□□ -0.42
CLN3-226ENST00000567160 KDF1Q8NAX2 398 aaPredicted RBP12.4□□□□□ -0.42
CLN3-226ENST00000567160 PAGE5Q96GU1 130 aa12.4□□□□□ -0.42
CLN3-226ENST00000567160 NLRP4Q96MN2 994 aa12.4□□□□□ -0.42
CLN3-226ENST00000567160 BLZF1Q9H2G9 400 aa12.4□□□□□ -0.42
CLN3-226ENST00000567160 FBXW11Q9UKB1 542 aa12.4□□□□□ -0.42
CLN3-226ENST00000567160 NDRG2Q9UN36 371 aaKnown RBP12.4□□□□□ -0.42
CLN3-226ENST00000567160 POLIQ9UNA4 740 aa12.4□□□□□ -0.42
CLN3-226ENST00000567160 MYMKA6NI61 221 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 C8AP07357 584 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 PRR29P0C7W0 189 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 ITGA4P13612 1032 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 CYP11B2P19099 503 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 RFC5P40937 340 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 CXCL12P48061 93 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 NTHL1P78549 312 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 CACNB1Q02641 598 aaPredicted RBP12.39□□□□□ -0.43
CLN3-226ENST00000567160 DSC1Q08554 894 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 EMC2Q15006 297 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 CAMK4Q16566 473 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 ARSHQ5FYA8 562 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 RINT1Q6NUQ1 792 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 FUT10Q6P4F1 479 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 C1orf186Q6ZWK4 172 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 ITFG1Q8TB96 612 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 TIGD1Q96MW7 591 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 CEP89Q96ST8 783 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 MTRQ99707 1265 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 JPH2Q9BR39 696 aaPredicted RBP12.39□□□□□ -0.43
CLN3-226ENST00000567160 TNMDQ9H2S6 317 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 MAGEF1Q9HAY2 307 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 POLD4Q9HCU8 107 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 KBTBD4Q9NVX7 518 aa12.39□□□□□ -0.43
CLN3-226ENST00000567160 SUCLA2Q9P2R7 463 aaPredicted RBP12.39□□□□□ -0.43
CLN3-226ENST00000567160 ZZEF1O43149 2961 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 IGKV6-21A0A0C4DH24 114 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 C1QTNF9BB2RNN3 333 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 TM4SF5O14894 197 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 CCL16O15467 120 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 DGAT1O75907 488 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 POU2F2P09086 479 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 C1QTNF9P0C862 333 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 RPL17P18621 184 aaKnown RBP12.38□□□□□ -0.43
CLN3-226ENST00000567160 ASIC1P78348 528 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 AMPD3Q01432 767 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 PNOCQ13519 176 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 CUL4BQ13620 913 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 PABPC1LQ4VXU2 614 aaKnown RBP12.38□□□□□ -0.43
CLN3-226ENST00000567160 CEP68Q76N32 757 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 LONP2Q86WA8 852 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 NPAS3Q8IXF0 933 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 SLC7A3Q8WY07 619 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 DDX12PQ92771 950 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 ERCC4Q92889 916 aaPredicted RBP12.38□□□□□ -0.43
CLN3-226ENST00000567160 TMEM143Q96AN5 459 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 CCDC34Q96HJ3 373 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 B3GALT6Q96L58 329 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 LRRC27Q9C0I9 530 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 NUP62CLQ9H1M0 184 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 CLSTN2Q9H4D0 955 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 DHX33Q9H6R0 707 aaKnown RBP12.38□□□□□ -0.43
CLN3-226ENST00000567160 GDE1Q9NZC3 331 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 ADAM28Q9UKQ2 775 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 SPAG17Q6Q759 2223 aa12.38□□□□□ -0.43
CLN3-226ENST00000567160 IGF2RP11717 2491 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 SPEGQ15772 3267 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 ARL5CA6NH57 179 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 HRO43593 1189 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 TRAK2O60296 914 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 HIP1RO75146 1068 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 MAFO75444 373 aaPredicted RBP12.37□□□□□ -0.43
CLN3-226ENST00000567160 KCNK5O95279 499 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 IDEP14735 1019 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 MLH1P40692 756 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 POSTNQ15063 836 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 CAVIN1Q6NZI2 390 aaKnown RBP12.37□□□□□ -0.43
CLN3-226ENST00000567160 HACE1Q8IYU2 909 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 MCPH1Q8NEM0 835 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 FAM3CQ92520 227 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 ELSPBP1Q96BH3 223 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 C7orf25Q9BPX7 421 aa12.37□□□□□ -0.43
CLN3-226ENST00000567160 REEP2Q9BRK0 252 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms