RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 NPAS3Q8IXF0 933 aa16.24■□□□□ 0.19
CLN3-222ENST00000566083 DDX12PQ92771 950 aa16.24■□□□□ 0.19
CLN3-222ENST00000566083 C18orf25Q96B23 403 aaPredicted RBP16.24■□□□□ 0.19
CLN3-222ENST00000566083 BORCS6Q96GS4 357 aa16.24■□□□□ 0.19
CLN3-222ENST00000566083 REEP2Q9BRK0 252 aa16.24■□□□□ 0.19
CLN3-222ENST00000566083 CYP4F11Q9HBI6 524 aa16.24■□□□□ 0.19
CLN3-222ENST00000566083 AFF4Q9UHB7 1163 aaKnown RBP16.24■□□□□ 0.19
CLN3-222ENST00000566083 TBX20Q9UMR3 447 aa16.24■□□□□ 0.19
CLN3-222ENST00000566083 OGTO15294 1046 aa16.23■□□□□ 0.19
CLN3-222ENST00000566083 TRAK2O60296 914 aa16.23■□□□□ 0.19
CLN3-222ENST00000566083 ECI2O75521 394 aa16.23■□□□□ 0.19
CLN3-222ENST00000566083 CD2BP2O95400 341 aaKnown RBP16.23■□□□□ 0.19
CLN3-222ENST00000566083 CXCL8P10145 99 aa16.23■□□□□ 0.19
CLN3-222ENST00000566083 MAGEA9P43362 315 aa16.23■□□□□ 0.19
CLN3-222ENST00000566083 GPC5P78333 572 aa16.23■□□□□ 0.19
CLN3-222ENST00000566083 CYP4A22Q5TCH4 519 aa16.23■□□□□ 0.19
CLN3-222ENST00000566083 ITFG1Q8TB96 612 aa16.23■□□□□ 0.19
CLN3-222ENST00000566083 KIF12Q96FN5 646 aa16.23■□□□□ 0.19
CLN3-222ENST00000566083 ZNF512Q96ME7 567 aaPredicted RBP16.23■□□□□ 0.19
CLN3-222ENST00000566083 NELL2Q99435 816 aa16.23■□□□□ 0.19
CLN3-222ENST00000566083 OSBPL6Q9BZF3 934 aa16.23■□□□□ 0.19
CLN3-222ENST00000566083 CCSER1Q9C0I3 900 aa16.23■□□□□ 0.19
CLN3-222ENST00000566083 RPF1Q9H9Y2 349 aaKnown RBP16.23■□□□□ 0.19
CLN3-222ENST00000566083 K7ENM7 598 aa16.22■□□□□ 0.19
CLN3-222ENST00000566083 M0QZQ0 153 aa16.22■□□□□ 0.19
CLN3-222ENST00000566083 OAZ2O95190 189 aa16.22■□□□□ 0.19
CLN3-222ENST00000566083 IGFBP6P24592 240 aaPredicted RBP16.22■□□□□ 0.19
CLN3-222ENST00000566083 DDIT3P35638 169 aa16.22■□□□□ 0.19
CLN3-222ENST00000566083 ARPP19P56211 112 aa16.22■□□□□ 0.19
CLN3-222ENST00000566083 POU5F1Q01860 360 aaKnown RBP16.22■□□□□ 0.19
CLN3-222ENST00000566083 YWHAHQ04917 246 aaPredicted RBP16.22■□□□□ 0.19
CLN3-222ENST00000566083 PLD1Q13393 1074 aa16.22■□□□□ 0.19
CLN3-222ENST00000566083 ZBTB6Q15916 424 aa16.22■□□□□ 0.19
CLN3-222ENST00000566083 SLFN12LQ6IEE8 588 aa16.22■□□□□ 0.19
CLN3-222ENST00000566083 ZC3H14Q6PJT7 736 aaKnown RBP16.22■□□□□ 0.19
CLN3-222ENST00000566083 USP37Q86T82 979 aa16.22■□□□□ 0.19
CLN3-222ENST00000566083 KRI1Q8N9T8 703 aaKnown RBP16.22■□□□□ 0.19
CLN3-222ENST00000566083 LARP4BQ92615 738 aaKnown RBP16.22■□□□□ 0.19
CLN3-222ENST00000566083 RAD54LQ92698 747 aa16.22■□□□□ 0.19
CLN3-222ENST00000566083 HCFC1R1Q9NWW0 138 aa16.22■□□□□ 0.19
CLN3-222ENST00000566083 CCDC39Q9UFE4 941 aa16.22■□□□□ 0.19
CLN3-222ENST00000566083 INSL5Q9Y5Q6 135 aa16.22■□□□□ 0.19
CLN3-222ENST00000566083 EP300Q09472 2414 aaPredicted RBP16.22■□□□□ 0.19
CLN3-222ENST00000566083 NPHP3-ACAD11A0A0J9YXS1 232 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 KANSL1LA0AUZ9 987 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 PRR23AA6NEV1 266 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 OR6C75A6NL08 312 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 ADRB2P07550 413 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 CPB1P15086 417 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 PLCG1P19174 1290 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 GTF2BQ00403 316 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 CACNB1Q02641 598 aaPredicted RBP16.21■□□□□ 0.19
CLN3-222ENST00000566083 DHX8Q14562 1220 aaKnown RBP16.21■□□□□ 0.19
CLN3-222ENST00000566083 SF3A1Q15459 793 aaKnown RBP16.21■□□□□ 0.19
CLN3-222ENST00000566083 MLF2Q15773 248 aaPredicted RBP16.21■□□□□ 0.19
CLN3-222ENST00000566083 SLC44A4Q53GD3 710 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 PDZD4Q76G19 769 aaPredicted RBP16.21■□□□□ 0.19
CLN3-222ENST00000566083 BEST2Q8NFU1 509 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 PJA1Q8NG27 643 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 ELSPBP1Q96BH3 223 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 MSTO1Q9BUK6 570 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 RPP25Q9BUL9 199 aaKnown RBP16.21■□□□□ 0.19
CLN3-222ENST00000566083 BCO2Q9BYV7 579 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 ST6GALNAC4Q9H4F1 302 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 BLOC1S4Q9NUP1 217 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 MRPS17Q9Y2R5 130 aaKnown RBP16.21■□□□□ 0.19
CLN3-222ENST00000566083 DERAQ9Y315 318 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 F5P12259 2224 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 GVINP1Q7Z2Y8 2422 aa16.21■□□□□ 0.19
CLN3-222ENST00000566083 A0A0B4J269 797 aa16.2■□□□□ 0.18
CLN3-222ENST00000566083 NCAM2O15394 837 aa16.2■□□□□ 0.18
CLN3-222ENST00000566083 MEFVO15553 781 aaPredicted RBP16.2■□□□□ 0.18
CLN3-222ENST00000566083 TXLNAP40222 546 aa16.2■□□□□ 0.18
CLN3-222ENST00000566083 AARSP49588 968 aaKnown RBP eCLIP16.2■□□□□ 0.18
CLN3-222ENST00000566083 ADCY1Q08828 1119 aa16.2■□□□□ 0.18
CLN3-222ENST00000566083 KARSQ15046 597 aaKnown RBP16.2■□□□□ 0.18
CLN3-222ENST00000566083 SEZ6Q53EL9 994 aa16.2■□□□□ 0.18
CLN3-222ENST00000566083 DSTYKQ6XUX3 929 aa16.2■□□□□ 0.18
CLN3-222ENST00000566083 FRMD5Q7Z6J6 570 aa16.2■□□□□ 0.18
CLN3-222ENST00000566083 MAP4K3Q8IVH8 894 aa16.2■□□□□ 0.18
CLN3-222ENST00000566083 CORO1BQ9BR76 489 aa16.2■□□□□ 0.18
CLN3-222ENST00000566083 DDX23Q9BUQ8 820 aaKnown RBP16.2■□□□□ 0.18
CLN3-222ENST00000566083 GPR88Q9GZN0 384 aa16.2■□□□□ 0.18
CLN3-222ENST00000566083 ZHX3Q9H4I2 956 aa16.2■□□□□ 0.18
CLN3-222ENST00000566083 ASB7Q9H672 318 aa16.2■□□□□ 0.18
CLN3-222ENST00000566083 ZFP14Q9HCL3 533 aa16.2■□□□□ 0.18
CLN3-222ENST00000566083 STK17AQ9UEE5 414 aa16.2■□□□□ 0.18
CLN3-222ENST00000566083 TUBGCP4Q9UGJ1 667 aa16.2■□□□□ 0.18
CLN3-222ENST00000566083 CACNA1IQ9P0X4 2223 aa16.2■□□□□ 0.18
CLN3-222ENST00000566083 NOTCH4Q99466 2003 aa16.2■□□□□ 0.18
CLN3-222ENST00000566083 LACTBL1A8MY62 500 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 TYMPP19971 482 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 SNW1Q13573 536 aaKnown RBP16.19■□□□□ 0.18
CLN3-222ENST00000566083 CUL4AQ13619 759 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 MCM6Q14566 821 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 POSTNQ15063 836 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 SPATA1Q5VX52 437 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 C1orf210Q8IVY1 113 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 ING5Q8WYH8 240 aa16.19■□□□□ 0.18
CLN3-222ENST00000566083 DNASE1L2Q92874 299 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms