RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 SLBPQ14493 270 aaKnown RBP eCLIP5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 CRY1Q16526 586 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 IFI16Q16666 785 aaKnown RBP5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 PAN2Q504Q3 1202 aaKnown RBP5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 CCDC62Q6P9F0 684 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 SDCCAG8Q86SQ7 713 aaPredicted RBP5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 CXorf67Q86X51 503 aaPredicted RBP5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 ANKRD13BQ86YJ7 626 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 EPHX4Q8IUS5 362 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 UNC5CLQ8IV45 518 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 SAMD14Q8IZD0 417 aaPredicted RBP5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 GALNT11Q8NCW6 608 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 LSM14AQ8ND56 463 aaKnown RBP5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 RCBTB1Q8NDN9 531 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 GOT1L1Q8NHS2 421 aaPredicted RBP5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 ADAMTS15Q8TE58 950 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 ST8SIA4Q92187 359 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 N4BP2L2Q92802 583 aaPredicted RBP5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 JAKMIP2Q96AA8 810 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 KCNJ15Q99712 375 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 ANP32EQ9BTT0 268 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 MXD3Q9BW11 206 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 SSBP4Q9BWG4 385 aaPredicted RBP5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 PRDM14Q9GZV8 571 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 PCIF1Q9H4Z3 704 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 TMEM160Q9NX00 188 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 GFOD1Q9NXC2 390 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 DCAF16Q9NXF7 216 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 IGSF9Q9P2J2 1179 aa5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 CPSF1Q10570 1443 aaKnown RBP5.78□□□□□ -1.48
VPS35P1-201ENST00000563400 hCG_1807616A0A1W2PRN6 198 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 F8W031 263 aaPredicted RBP5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 H0Y8X5 98 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 FOXN3O00409 490 aaPredicted RBP5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 FYB1O15117 783 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 GSTA4O15217 222 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 B3GALNT1O75752 331 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 ALAS1P13196 640 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 BRAFP15056 766 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 LTBRP36941 435 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 CD86P42081 329 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 SLC16A1P53985 500 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 FOXO4P98177 505 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 AP1B1Q10567 949 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 DUSP4Q13115 394 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 CNGA2Q16280 664 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 KIZQ2M2Z5 673 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 NBPF9Q3BBW0 867 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 MMEL1Q495T6 779 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 TTC31Q49AM3 519 aaPredicted RBP5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 PITRM1Q5JRX3 1037 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 ISM2Q6H9L7 571 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 SLC22A25Q6T423 547 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 TOM1L2Q6ZVM7 507 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 SLC51AQ86UW1 340 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 CEP97Q8IW35 865 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 DZIP1LQ8IYY4 767 aaKnown RBP5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 AVL9Q8NBF6 648 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 SPPL3Q8TCT6 385 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 KCNG4Q8TDN1 519 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 CREB3L4Q8TEY5 395 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 NRG4Q8WWG1 115 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 RAPGEF4Q8WZA2 1011 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 SPATA17Q96L03 361 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 KCTD10Q9H3F6 313 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 TSPY26PQ9H489 355 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 MLXIPQ9HAP2 919 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 SPON1Q9HCB6 807 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 XAB2Q9HCS7 855 aaKnown RBP5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 RPS6KA6Q9UK32 745 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 BLOC1S6Q9UL45 172 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 CNPY2Q9Y2B0 182 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 RRP15Q9Y3B9 282 aaKnown RBP5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 ST14Q9Y5Y6 855 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 KIF7Q2M1P5 1343 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 CCDC7Q96M83 1385 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 ROBO1Q9Y6N7 1651 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 FMN2Q9NZ56 1722 aa5.77□□□□□ -1.49
VPS35P1-201ENST00000563400 LRRC14BA6NHZ5 514 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 ZNF561-AS1K7EIQ3 104 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 MYO1FO00160 1098 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 MEIS1O00470 390 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 SLC7A4O43246 635 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 ALX3O95076 343 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 AMY2AP04746 511 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 PLS3P13797 630 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 AMY2BP19961 511 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 FGFR2P21802 821 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 AOAHP28039 575 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 ABCD1P33897 745 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 MANFP55145 182 aaKnown RBP5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 DSC2Q02487 901 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 ARMC4Q5T2S8 1044 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 MBNL2Q5VZF2 373 aaKnown RBP5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 ACAD10Q6JQN1 1059 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 TATDN1Q6P1N9 297 aa5.76□□□□□ -1.49
VPS35P1-201ENST00000563400 RIOX2Q8IUF8 465 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms