RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 C2CD2Q9Y426 696 aa22.83■■□□□ 1.25
CLN3-209ENST00000561689 PJA2O43164 708 aa22.83■■□□□ 1.24
CLN3-209ENST00000561689 MTFR1Q15390 333 aa22.83■■□□□ 1.24
CLN3-209ENST00000561689 CD302Q8IX05 232 aa22.83■■□□□ 1.24
CLN3-209ENST00000561689 CXorf38Q8TB03 319 aa22.83■■□□□ 1.24
CLN3-209ENST00000561689 KLK14Q9P0G3 267 aa22.83■■□□□ 1.24
CLN3-209ENST00000561689 SALL4Q9UJQ4 1053 aa22.83■■□□□ 1.24
CLN3-209ENST00000561689 PCDHB4Q9Y5E5 795 aa22.83■■□□□ 1.24
CLN3-209ENST00000561689 C10orf76Q5T2E6 689 aa22.82■■□□□ 1.24
CLN3-209ENST00000561689 TXLNBQ8N3L3 684 aa22.82■■□□□ 1.24
CLN3-209ENST00000561689 SECISBP2LQ93073 1101 aaKnown RBP22.82■■□□□ 1.24
CLN3-209ENST00000561689 NIF3L1Q9GZT8 377 aa22.82■■□□□ 1.24
CLN3-209ENST00000561689 MYO1AQ9UBC5 1043 aa22.82■■□□□ 1.24
CLN3-209ENST00000561689 NXF1Q9UBU9 619 aaKnown RBP22.82■■□□□ 1.24
CLN3-209ENST00000561689 IPPQ9Y573 584 aa22.82■■□□□ 1.24
CLN3-209ENST00000561689 KBTBD13C9JR72 458 aa22.81■■□□□ 1.24
CLN3-209ENST00000561689 CHRNB2P17787 502 aa22.81■■□□□ 1.24
CLN3-209ENST00000561689 PDE6CP51160 858 aa22.81■■□□□ 1.24
CLN3-209ENST00000561689 TRIM71Q2Q1W2 868 aaKnown RBP22.81■■□□□ 1.24
CLN3-209ENST00000561689 GLRA4Q5JXX5 417 aa22.81■■□□□ 1.24
CLN3-209ENST00000561689 TMEM270Q6UE05 265 aa22.81■■□□□ 1.24
CLN3-209ENST00000561689 SCARA5Q6ZMJ2 495 aa22.81■■□□□ 1.24
CLN3-209ENST00000561689 SMG8Q8ND04 991 aaKnown RBP22.81■■□□□ 1.24
CLN3-209ENST00000561689 DEFB118Q96PH6 123 aa22.81■■□□□ 1.24
CLN3-209ENST00000561689 DPP3Q9NY33 737 aa22.81■■□□□ 1.24
CLN3-209ENST00000561689 TAS2R14Q9NYV8 317 aa22.81■■□□□ 1.24
CLN3-209ENST00000561689 PARP2Q9UGN5 583 aa22.81■■□□□ 1.24
CLN3-209ENST00000561689 MMEP08473 750 aa22.81■■□□□ 1.24
CLN3-209ENST00000561689 GHRP10912 638 aa22.81■■□□□ 1.24
CLN3-209ENST00000561689 POLR2BP30876 1174 aaKnown RBP22.81■■□□□ 1.24
CLN3-209ENST00000561689 ALKAL1Q6UXT8 129 aa22.81■■□□□ 1.24
CLN3-209ENST00000561689 POLIQ9UNA4 740 aa22.81■■□□□ 1.24
CLN3-209ENST00000561689 AGAP1Q9UPQ3 857 aa22.81■■□□□ 1.24
CLN3-209ENST00000561689 PHF24Q9UPV7 400 aa22.81■■□□□ 1.24
CLN3-209ENST00000561689 ANK1P16157 1881 aa22.81■■□□□ 1.24
CLN3-209ENST00000561689 MOCS3O95396 460 aa22.8■■□□□ 1.24
CLN3-209ENST00000561689 WEE2P0C1S8 567 aa22.8■■□□□ 1.24
CLN3-209ENST00000561689 CD58P19256 250 aa22.8■■□□□ 1.24
CLN3-209ENST00000561689 WDR72Q3MJ13 1102 aa22.8■■□□□ 1.24
CLN3-209ENST00000561689 NT5DC4Q86YG4 428 aa22.8■■□□□ 1.24
CLN3-209ENST00000561689 PCDHB18PQ96TA0 734 aa22.8■■□□□ 1.24
CLN3-209ENST00000561689 A0A0U1RQG5 324 aaPredicted RBP22.8■■□□□ 1.24
CLN3-209ENST00000561689 RIOK3O14730 519 aaKnown RBP22.8■■□□□ 1.24
CLN3-209ENST00000561689 GPR182O15218 404 aa22.8■■□□□ 1.24
CLN3-209ENST00000561689 URI1O94763 535 aaPredicted RBP22.8■■□□□ 1.24
CLN3-209ENST00000561689 CD52P31358 61 aa22.8■■□□□ 1.24
CLN3-209ENST00000561689 ASPAP45381 313 aa22.8■■□□□ 1.24
CLN3-209ENST00000561689 FBXO47Q5MNV8 452 aa22.8■■□□□ 1.24
CLN3-209ENST00000561689 ZNF618Q5T7W0 954 aa22.8■■□□□ 1.24
CLN3-209ENST00000561689 SLC43A3Q8NBI5 491 aa22.8■■□□□ 1.24
CLN3-209ENST00000561689 DDX1Q92499 740 aaKnown RBP22.8■■□□□ 1.24
CLN3-209ENST00000561689 C18orf25Q96B23 403 aaPredicted RBP22.8■■□□□ 1.24
CLN3-209ENST00000561689 PAK6Q9NQU5 681 aaPredicted RBP22.8■■□□□ 1.24
CLN3-209ENST00000561689 ITGA11Q9UKX5 1188 aa22.8■■□□□ 1.24
CLN3-209ENST00000561689 PCDHB2Q9Y5E7 798 aa22.8■■□□□ 1.24
CLN3-209ENST00000561689 BUB1O43683 1085 aa22.79■■□□□ 1.24
CLN3-209ENST00000561689 H2AFZP0C0S5 128 aa22.79■■□□□ 1.24
CLN3-209ENST00000561689 FMO1Q01740 532 aa22.79■■□□□ 1.24
CLN3-209ENST00000561689 CDR2Q01850 454 aa22.79■■□□□ 1.24
CLN3-209ENST00000561689 H2AFVQ71UI9 128 aa22.79■■□□□ 1.24
CLN3-209ENST00000561689 RBBP8NLQ8NC74 664 aaPredicted RBP22.79■■□□□ 1.24
CLN3-209ENST00000561689 TAF4BQ92750 862 aa22.79■■□□□ 1.24
CLN3-209ENST00000561689 RNF208Q9H0X6 261 aa22.79■■□□□ 1.24
CLN3-209ENST00000561689 CNTN3Q9P232 1028 aa22.79■■□□□ 1.24
CLN3-209ENST00000561689 TUBGCP4Q9UGJ1 667 aa22.79■■□□□ 1.24
CLN3-209ENST00000561689 PADI3Q9ULW8 664 aa22.79■■□□□ 1.24
CLN3-209ENST00000561689 DERAQ9Y315 318 aa22.79■■□□□ 1.24
CLN3-209ENST00000561689 CAPN6Q9Y6Q1 641 aa22.79■■□□□ 1.24
CLN3-209ENST00000561689 NAP1L1P55209 391 aaKnown RBP22.78■■□□□ 1.24
CLN3-209ENST00000561689 RBP5P82980 135 aa22.78■■□□□ 1.24
CLN3-209ENST00000561689 LPIN1Q14693 890 aa22.78■■□□□ 1.24
CLN3-209ENST00000561689 ZNF667Q5HYK9 610 aa22.78■■□□□ 1.24
CLN3-209ENST00000561689 UBR7Q8N806 425 aa22.78■■□□□ 1.24
CLN3-209ENST00000561689 HPDLQ96IR7 371 aa22.78■■□□□ 1.24
CLN3-209ENST00000561689 CISHQ9NSE2 258 aa22.78■■□□□ 1.24
CLN3-209ENST00000561689 CNTN6Q9UQ52 1028 aa22.78■■□□□ 1.24
CLN3-209ENST00000561689 ARVCFO00192 962 aa22.78■■□□□ 1.24
CLN3-209ENST00000561689 CCL5P13501 91 aa22.78■■□□□ 1.24
CLN3-209ENST00000561689 GALCP54803 685 aa22.78■■□□□ 1.24
CLN3-209ENST00000561689 PAK2Q13177 524 aa22.78■■□□□ 1.24
CLN3-209ENST00000561689 ZBTB6Q15916 424 aa22.78■■□□□ 1.24
CLN3-209ENST00000561689 ERVK-5Q9HDB9 667 aa22.78■■□□□ 1.24
CLN3-209ENST00000561689 CHST12Q9NRB3 414 aa22.78■■□□□ 1.24
CLN3-209ENST00000561689 SMIM28A0A1B0GU29 152 aa22.77■■□□□ 1.24
CLN3-209ENST00000561689 CTAGE9A4FU28 777 aa22.77■■□□□ 1.24
CLN3-209ENST00000561689 DNM1LO00429 736 aa22.77■■□□□ 1.24
CLN3-209ENST00000561689 CKBP12277 381 aa22.77■■□□□ 1.24
CLN3-209ENST00000561689 ATICP31939 592 aa22.77■■□□□ 1.24
CLN3-209ENST00000561689 RAP1GAPP47736 663 aa22.77■■□□□ 1.24
CLN3-209ENST00000561689 MYRIPQ8NFW9 859 aa22.77■■□□□ 1.24
CLN3-209ENST00000561689 FAM105AQ9NUU6 356 aa22.77■■□□□ 1.24
CLN3-209ENST00000561689 ABCB4P21439 1286 aa22.76■■□□□ 1.23
CLN3-209ENST00000561689 BPIFB4P59827 614 aa22.76■■□□□ 1.23
CLN3-209ENST00000561689 ZNF394Q53GI3 561 aa22.76■■□□□ 1.23
CLN3-209ENST00000561689 FAM26DQ5JW98 314 aa22.76■■□□□ 1.23
CLN3-209ENST00000561689 NOX5Q96PH1 765 aa22.76■■□□□ 1.23
CLN3-209ENST00000561689 MEIS3P2A8K0S8 358 aa22.76■■□□□ 1.23
CLN3-209ENST00000561689 ENC1O14682 589 aa22.76■■□□□ 1.23
CLN3-209ENST00000561689 TACC1O75410 805 aa22.76■■□□□ 1.23
CLN3-209ENST00000561689 FTLP02792 175 aaPredicted RBP22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms