RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 FNIP2Q9P278 1114 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 ANK1P16157 1881 aa14.06□□□□□ -0.16
NEDD8-208ENST00000560427 BICDL2A1A5D9 508 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 M0QZQ0 153 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 CETN3O15182 167 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 TNNC2P02585 160 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 ADH1AP07327 375 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 PTMSP20962 102 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 CCNE1P24864 410 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 CA8P35219 290 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 PSMC2P35998 433 aaKnown RBP14.05□□□□□ -0.16
NEDD8-208ENST00000560427 NRIP1P48552 1158 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 NDUFV1P49821 464 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 TAF6P49848 677 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 CLDN10P78369 228 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 FKBP3Q00688 224 aaKnown RBP14.05□□□□□ -0.16
NEDD8-208ENST00000560427 ADAM9Q13443 819 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 CTC1Q2NKJ3 1217 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 RTP2Q5QGT7 225 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 ANKS3Q6ZW76 656 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 INTS8Q75QN2 995 aaKnown RBP14.05□□□□□ -0.16
NEDD8-208ENST00000560427 ADGRD2Q7Z7M1 963 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 ZC3H3Q8IXZ2 948 aaKnown RBP14.05□□□□□ -0.16
NEDD8-208ENST00000560427 C1orf127Q8N9H9 656 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 RDH13Q8NBN7 331 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 APPL2Q8NEU8 664 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 GPT2Q8TD30 523 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 TMC2Q8TDI7 906 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 PPM1EQ8WY54 764 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 HLA-CQ95604 372 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 MTMR12Q9C0I1 747 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 PCDHB8Q9UN66 801 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 PCDHGC5Q9Y5F6 944 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 TRIP11Q15643 1979 aa14.05□□□□□ -0.16
NEDD8-208ENST00000560427 SLC16A3O15427 465 aaKnown RBP14.04□□□□□ -0.16
NEDD8-208ENST00000560427 DLATP10515 647 aaKnown RBP14.04□□□□□ -0.16
NEDD8-208ENST00000560427 BMP6P22004 513 aa14.04□□□□□ -0.16
NEDD8-208ENST00000560427 BRCC3P46736 316 aa14.04□□□□□ -0.16
NEDD8-208ENST00000560427 GUCY2FP51841 1108 aa14.04□□□□□ -0.16
NEDD8-208ENST00000560427 LILRA4P59901 499 aa14.04□□□□□ -0.16
NEDD8-208ENST00000560427 RBP5P82980 135 aa14.04□□□□□ -0.16
NEDD8-208ENST00000560427 SV2CQ496J9 727 aa14.04□□□□□ -0.16
NEDD8-208ENST00000560427 CEP135Q66GS9 1140 aa14.04□□□□□ -0.16
NEDD8-208ENST00000560427 TMEM184AQ6ZMB5 413 aa14.04□□□□□ -0.16
NEDD8-208ENST00000560427 TAS1R1Q7RTX1 841 aa14.04□□□□□ -0.16
NEDD8-208ENST00000560427 MLKLQ8NB16 471 aa14.04□□□□□ -0.16
NEDD8-208ENST00000560427 PARD3BQ8TEW8 1205 aa14.04□□□□□ -0.16
NEDD8-208ENST00000560427 RIN2Q8WYP3 895 aaPredicted RBP14.04□□□□□ -0.16
NEDD8-208ENST00000560427 CASP10Q92851 521 aa14.04□□□□□ -0.16
NEDD8-208ENST00000560427 CCDC127Q96BQ5 260 aa14.04□□□□□ -0.16
NEDD8-208ENST00000560427 KLHL5Q96PQ7 755 aa14.04□□□□□ -0.16
NEDD8-208ENST00000560427 OXCT2Q9BYC2 517 aaPredicted RBP14.04□□□□□ -0.16
NEDD8-208ENST00000560427 UBE2ZQ9H832 354 aaPredicted RBP14.04□□□□□ -0.16
NEDD8-208ENST00000560427 THEGQ9P2T0 379 aa14.04□□□□□ -0.16
NEDD8-208ENST00000560427 DPP7Q9UHL4 492 aa14.04□□□□□ -0.16
NEDD8-208ENST00000560427 R3HCC1Q9Y3T6 440 aaKnown RBP14.04□□□□□ -0.16
NEDD8-208ENST00000560427 BACE2Q9Y5Z0 518 aa14.04□□□□□ -0.16
NEDD8-208ENST00000560427 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.03□□□□□ -0.16
NEDD8-208ENST00000560427 PPP1R3GB7ZBB8 358 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 H7C4K7 107 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 BIN1O00499 593 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 C2CD2LO14523 706 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 IKBKBO14920 756 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 CLASP2O75122 1294 aaKnown RBP14.03□□□□□ -0.16
NEDD8-208ENST00000560427 AKAP3O75969 853 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 ITGB3P05106 788 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 CNPP09543 421 aaKnown RBP14.03□□□□□ -0.16
NEDD8-208ENST00000560427 EPB41P11171 864 aaKnown RBP14.03□□□□□ -0.16
NEDD8-208ENST00000560427 ODC1P11926 461 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 TNNI1P19237 187 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 TYMPP19971 482 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 POLR2BP30876 1174 aaKnown RBP14.03□□□□□ -0.16
NEDD8-208ENST00000560427 MCCD1P59942 119 aaPredicted RBP14.03□□□□□ -0.16
NEDD8-208ENST00000560427 PAK1Q13153 545 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 KCNC3Q14003 757 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 PSMD5Q16401 504 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 AAK1Q2M2I8 961 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 ELMSAN1Q6PJG2 1045 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 RBM23Q86U06 439 aaKnown RBP14.03□□□□□ -0.16
NEDD8-208ENST00000560427 CEP57Q86XR8 500 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 FAM186BQ8IYM0 893 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 CXorf38Q8TB03 319 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 LNX1Q8TBB1 728 aaPredicted RBP14.03□□□□□ -0.16
NEDD8-208ENST00000560427 AUTS2Q8WXX7 1259 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 CEP63Q96MT8 703 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 DZANK1Q9NVP4 752 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 MTRRQ9UBK8 725 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 DACH1Q9UI36 760 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 DSEQ9UL01 958 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 PTPRJQ12913 1337 aa14.03□□□□□ -0.16
NEDD8-208ENST00000560427 PER2O15055 1255 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 TEX28O15482 410 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 KRT13P13646 458 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 CD44P16070 742 aaKnown RBP14.02□□□□□ -0.17
NEDD8-208ENST00000560427 TKTP29401 623 aaKnown RBP14.02□□□□□ -0.17
NEDD8-208ENST00000560427 CASP4P49662 377 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 CLCN4P51793 760 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 BFSP1Q12934 665 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 MYO1EQ12965 1108 aa14.02□□□□□ -0.17
NEDD8-208ENST00000560427 ADAM15Q13444 863 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms