RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 PRKCIP41743 596 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 GUCY2FP51841 1108 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 RBP5P82980 135 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 CUL2Q13617 745 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 ZNF699Q32M78 642 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 TDRD12Q587J7 1177 aaKnown RBP12.06□□□□□ -0.48
USP3-218ENST00000560202 AGMOQ6ZNB7 445 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 TOGARAM2Q6ZUX3 1019 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 NECAB2Q7Z6G3 386 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 RTN4RL1Q86UN2 441 aaPredicted RBP12.06□□□□□ -0.48
USP3-218ENST00000560202 CCDC170Q8IYT3 715 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 TMEM130Q8N3G9 435 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 SHC3Q92529 594 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 TAF4BQ92750 862 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 LPPQ93052 612 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 PGBD4Q96DM1 585 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 CCDC42Q96M95 316 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 FTHL17Q9BXU8 183 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 RNF19AQ9NV58 838 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 TUBGCP4Q9UGJ1 667 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 AGAP1Q9UPQ3 857 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 GIT1Q9Y2X7 761 aa12.06□□□□□ -0.48
USP3-218ENST00000560202 BZW2Q9Y6E2 419 aaKnown RBP12.06□□□□□ -0.48
USP3-218ENST00000560202 EPN1Q9Y6I3 576 aaPredicted RBP12.06□□□□□ -0.48
USP3-218ENST00000560202 SSU72P8A0A1W2PR75 194 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 XPOTO43592 962 aaKnown RBP12.05□□□□□ -0.48
USP3-218ENST00000560202 EVI5O60447 810 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 NDUFA10O95299 355 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 CCDC172P0C7W6 258 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 ATF7P17544 494 aaPredicted RBP12.05□□□□□ -0.48
USP3-218ENST00000560202 TBXAS1P24557 533 aaPredicted RBP12.05□□□□□ -0.48
USP3-218ENST00000560202 CYLC1P35663 651 aaPredicted RBP12.05□□□□□ -0.48
USP3-218ENST00000560202 LRRC26Q2I0M4 334 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 PLEKHG4Q58EX7 1191 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 SLC24A5Q71RS6 500 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 ECHDC2Q86YB7 292 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 FAM71AQ8IYT1 594 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 DBF4BQ8NFT6 615 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 JAKMIP2Q96AA8 810 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 C18orf25Q96B23 403 aaPredicted RBP12.05□□□□□ -0.48
USP3-218ENST00000560202 ZFP42Q96MM3 310 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 ARID3AQ99856 593 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 DESI2Q9BSY9 194 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 PPP1R12CQ9BZL4 782 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 NIF3L1Q9GZT8 377 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 WNT8AQ9H1J5 351 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 DEF6Q9H4E7 631 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 HAUS4Q9H6D7 363 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 TBX21Q9UL17 535 aa12.05□□□□□ -0.48
USP3-218ENST00000560202 ANK1P16157 1881 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 C9IYK1 514 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 PTGESO14684 152 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 PARNO95453 639 aaKnown RBP12.04□□□□□ -0.48
USP3-218ENST00000560202 CLTBP09497 229 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 CYP3A5P20815 502 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 CYP2C18P33260 490 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 MLH1P40692 756 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 USP8P40818 1118 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 CCL23P55773 120 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 PTK2Q05397 1052 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 ASTE1Q2TB18 679 aaPredicted RBP12.04□□□□□ -0.48
USP3-218ENST00000560202 FAM43BQ6ZT52 329 aaPredicted RBP12.04□□□□□ -0.48
USP3-218ENST00000560202 ZNF598Q86UK7 904 aaKnown RBP12.04□□□□□ -0.48
USP3-218ENST00000560202 CCAR2Q8N163 923 aaKnown RBP12.04□□□□□ -0.48
USP3-218ENST00000560202 PDCL2Q8N4E4 241 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 RNF169Q8NCN4 708 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 GSTCDQ8NEC7 633 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 LINC01599Q8WXQ3 324 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 SEPT8Q92599 483 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 SCLYQ96I15 445 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 PPP1R10Q96QC0 940 aaKnown RBP12.04□□□□□ -0.48
USP3-218ENST00000560202 GAD1Q99259 594 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 VRTNQ9H8Y1 702 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 UBN1Q9NPG3 1134 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 KCND1Q9NSA2 647 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 TMEM39AQ9NV64 488 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 PPP2R2CQ9Y2T4 447 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 ADGRG1Q9Y653 693 aa12.04□□□□□ -0.48
USP3-218ENST00000560202 ARL5CA6NH57 179 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 EIF3CLB5ME19 914 aaKnown RBP12.03□□□□□ -0.48
USP3-218ENST00000560202 AKR1B10O60218 316 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 STAU1O95793 577 aaKnown RBP12.03□□□□□ -0.48
USP3-218ENST00000560202 ACO1P21399 889 aaKnown RBP12.03□□□□□ -0.48
USP3-218ENST00000560202 IBSPP21815 317 aaPredicted RBP12.03□□□□□ -0.48
USP3-218ENST00000560202 KIF11P52732 1056 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 FAM193AP78312 1265 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 FAM189BP81408 668 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 WDR72Q3MJ13 1102 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 ZNF667Q5HYK9 610 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 DNTTIP2Q5QJE6 756 aaKnown RBP12.03□□□□□ -0.48
USP3-218ENST00000560202 ZNF571Q7Z3V5 609 aaPredicted RBP12.03□□□□□ -0.48
USP3-218ENST00000560202 ACRBPQ8NEB7 543 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 APBB2Q92870 758 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 HPDLQ96IR7 371 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 FAXDC2Q96IV6 333 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 RPS6KC1Q96S38 1066 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 EIF3CQ99613 913 aaKnown RBP12.03□□□□□ -0.48
USP3-218ENST00000560202 TSPYL2Q9H2G4 693 aaPredicted RBP12.03□□□□□ -0.48
USP3-218ENST00000560202 RSAD1Q9HA92 442 aa12.03□□□□□ -0.48
USP3-218ENST00000560202 TRMT1Q9NXH9 659 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms