RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 ARPP21Q9UBL0 812 aaPredicted RBP6.24□□□□□ -1.41
VPS13C-208ENST00000559119 WASHC2AQ641Q2 1341 aa6.24□□□□□ -1.41
VPS13C-208ENST00000559119 CCDC151A5D8V7 595 aa6.23□□□□□ -1.41
VPS13C-208ENST00000559119 PRKD3O94806 890 aa6.23□□□□□ -1.41
VPS13C-208ENST00000559119 HAUS5O94927 633 aa6.23□□□□□ -1.41
VPS13C-208ENST00000559119 FCER1AP12319 257 aa6.23□□□□□ -1.41
VPS13C-208ENST00000559119 ABCG1P45844 678 aa6.23□□□□□ -1.41
VPS13C-208ENST00000559119 ATP8B2P98198 1209 aa6.23□□□□□ -1.41
VPS13C-208ENST00000559119 KAZNQ674X7 775 aa6.23□□□□□ -1.41
VPS13C-208ENST00000559119 RHOT1Q8IXI2 618 aa6.23□□□□□ -1.41
VPS13C-208ENST00000559119 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.23□□□□□ -1.41
VPS13C-208ENST00000559119 TMEM125Q96AQ2 219 aa6.23□□□□□ -1.41
VPS13C-208ENST00000559119 FBXL20Q96IG2 436 aa6.23□□□□□ -1.41
VPS13C-208ENST00000559119 KMT5AQ9NQR1 393 aa6.23□□□□□ -1.41
VPS13C-208ENST00000559119 A0A1W2PS29 197 aa6.22□□□□□ -1.41
VPS13C-208ENST00000559119 SRGNP10124 158 aa6.22□□□□□ -1.41
VPS13C-208ENST00000559119 MASP1P48740 699 aa6.22□□□□□ -1.41
VPS13C-208ENST00000559119 FPGSQ05932 587 aa6.22□□□□□ -1.41
VPS13C-208ENST00000559119 VWA1Q6PCB0 445 aa6.22□□□□□ -1.41
VPS13C-208ENST00000559119 CLNKQ7Z7G1 428 aa6.22□□□□□ -1.41
VPS13C-208ENST00000559119 SPATS2Q86XZ4 545 aaKnown RBP6.22□□□□□ -1.41
VPS13C-208ENST00000559119 AMOTL1Q8IY63 956 aa6.22□□□□□ -1.41
VPS13C-208ENST00000559119 Q8NA96 180 aa6.22□□□□□ -1.41
VPS13C-208ENST00000559119 WDR66Q8TBY9 1149 aa6.22□□□□□ -1.41
VPS13C-208ENST00000559119 DPF2Q92785 391 aa6.22□□□□□ -1.41
VPS13C-208ENST00000559119 SLC2A13Q96QE2 648 aa6.22□□□□□ -1.41
VPS13C-208ENST00000559119 SLC29A3Q9BZD2 475 aa6.22□□□□□ -1.41
VPS13C-208ENST00000559119 CPNE5Q9HCH3 593 aa6.22□□□□□ -1.41
VPS13C-208ENST00000559119 INTS13Q9NVM9 706 aa6.22□□□□□ -1.41
VPS13C-208ENST00000559119 INTUQ9ULD6 942 aa6.22□□□□□ -1.41
VPS13C-208ENST00000559119 PRAMEF33A0A0G2JMD5 474 aa6.21□□□□□ -1.42
VPS13C-208ENST00000559119 MPPED1O15442 326 aa6.21□□□□□ -1.42
VPS13C-208ENST00000559119 GPR39O43194 453 aa6.21□□□□□ -1.42
VPS13C-208ENST00000559119 PRAMEF10O60809 474 aa6.21□□□□□ -1.42
VPS13C-208ENST00000559119 EYA4O95677 639 aa6.21□□□□□ -1.42
VPS13C-208ENST00000559119 ERBB2P04626 1255 aa6.21□□□□□ -1.42
VPS13C-208ENST00000559119 GPD1P21695 349 aa6.21□□□□□ -1.42
VPS13C-208ENST00000559119 CNGA1P29973 690 aa6.21□□□□□ -1.42
VPS13C-208ENST00000559119 CTXN1P60606 82 aa6.21□□□□□ -1.42
VPS13C-208ENST00000559119 SRSF4Q08170 494 aaKnown RBP6.21□□□□□ -1.42
VPS13C-208ENST00000559119 NBPF8Q3BBV2 869 aa6.21□□□□□ -1.42
VPS13C-208ENST00000559119 KIAA0895LQ68EN5 471 aa6.21□□□□□ -1.42
VPS13C-208ENST00000559119 ZNF788Q6ZQV5 615 aa6.21□□□□□ -1.42
VPS13C-208ENST00000559119 LHFPL2Q6ZUX7 228 aa6.21□□□□□ -1.42
VPS13C-208ENST00000559119 RSPH3Q86UC2 560 aa6.21□□□□□ -1.42
VPS13C-208ENST00000559119 PPM1NQ8N819 430 aa6.21□□□□□ -1.42
VPS13C-208ENST00000559119 RNF7Q9UBF6 113 aa6.21□□□□□ -1.42
VPS13C-208ENST00000559119 SAP30BPQ9UHR5 308 aaKnown RBP6.21□□□□□ -1.42
VPS13C-208ENST00000559119 CDYLQ9Y232 598 aa6.21□□□□□ -1.42
VPS13C-208ENST00000559119 NEU2Q9Y3R4 380 aa6.21□□□□□ -1.42
VPS13C-208ENST00000559119 TLDC2A0PJX2 215 aa6.2□□□□□ -1.42
VPS13C-208ENST00000559119 DNAJC9-AS1A6NH13 148 aa6.2□□□□□ -1.42
VPS13C-208ENST00000559119 AGFG2O95081 481 aa6.2□□□□□ -1.42
VPS13C-208ENST00000559119 MTHFD1P11586 935 aaKnown RBP6.2□□□□□ -1.42
VPS13C-208ENST00000559119 KCNA2P16389 499 aa6.2□□□□□ -1.42
VPS13C-208ENST00000559119 HSD3B2P26439 372 aa6.2□□□□□ -1.42
VPS13C-208ENST00000559119 GRIA3P42263 894 aa6.2□□□□□ -1.42
VPS13C-208ENST00000559119 RPS7P62081 194 aaKnown RBP6.2□□□□□ -1.42
VPS13C-208ENST00000559119 ZNF844Q08AG5 666 aa6.2□□□□□ -1.42
VPS13C-208ENST00000559119 PEG10Q86TG7 708 aaKnown RBP6.2□□□□□ -1.42
VPS13C-208ENST00000559119 TOR1AIP2Q8NFQ8 470 aa6.2□□□□□ -1.42
VPS13C-208ENST00000559119 NRG4Q8WWG1 115 aa6.2□□□□□ -1.42
VPS13C-208ENST00000559119 TFAP2BQ92481 460 aa6.2□□□□□ -1.42
VPS13C-208ENST00000559119 SMG7Q92540 1137 aaKnown RBP6.2□□□□□ -1.42
VPS13C-208ENST00000559119 TIMP4Q99727 224 aa6.2□□□□□ -1.42
VPS13C-208ENST00000559119 TLR10Q9BXR5 811 aa6.2□□□□□ -1.42
VPS13C-208ENST00000559119 ENTPD2Q9Y5L3 495 aa6.2□□□□□ -1.42
VPS13C-208ENST00000559119 AGXTP21549 392 aa6.19□□□□□ -1.42
VPS13C-208ENST00000559119 MAPK10P53779 464 aa6.19□□□□□ -1.42
VPS13C-208ENST00000559119 PREPLQ4J6C6 727 aaPredicted RBP6.19□□□□□ -1.42
VPS13C-208ENST00000559119 TSTD2Q5T7W7 516 aa6.19□□□□□ -1.42
VPS13C-208ENST00000559119 UTP14CQ5TAP6 766 aaKnown RBP6.19□□□□□ -1.42
VPS13C-208ENST00000559119 RNF219Q5W0B1 726 aaPredicted RBP6.19□□□□□ -1.42
VPS13C-208ENST00000559119 PTF1AQ7RTS3 328 aa6.19□□□□□ -1.42
VPS13C-208ENST00000559119 SH2D3CQ8N5H7 860 aa6.19□□□□□ -1.42
VPS13C-208ENST00000559119 DCBLD1Q8N8Z6 715 aa6.19□□□□□ -1.42
VPS13C-208ENST00000559119 SLC30A5Q8TAD4 765 aa6.19□□□□□ -1.42
VPS13C-208ENST00000559119 COG1Q8WTW3 980 aa6.19□□□□□ -1.42
VPS13C-208ENST00000559119 TMX3Q96JJ7 454 aa6.19□□□□□ -1.42
VPS13C-208ENST00000559119 TDP1Q9NUW8 608 aa6.19□□□□□ -1.42
VPS13C-208ENST00000559119 GRM6O15303 877 aa6.18□□□□□ -1.42
VPS13C-208ENST00000559119 PROM1O43490 865 aa6.18□□□□□ -1.42
VPS13C-208ENST00000559119 WT1P19544 449 aaPredicted RBP6.18□□□□□ -1.42
VPS13C-208ENST00000559119 GATA3P23771 443 aa6.18□□□□□ -1.42
VPS13C-208ENST00000559119 SLC6A4P31645 630 aa6.18□□□□□ -1.42
VPS13C-208ENST00000559119 PROK1P58294 105 aa6.18□□□□□ -1.42
VPS13C-208ENST00000559119 CLUL1Q15846 466 aa6.18□□□□□ -1.42
VPS13C-208ENST00000559119 CD300EQ496F6 205 aaPredicted RBP6.18□□□□□ -1.42
VPS13C-208ENST00000559119 PABPC1LQ4VXU2 614 aaKnown RBP6.18□□□□□ -1.42
VPS13C-208ENST00000559119 MIGA2Q7L4E1 593 aa6.18□□□□□ -1.42
VPS13C-208ENST00000559119 ANKS1AQ92625 1134 aa6.18□□□□□ -1.42
VPS13C-208ENST00000559119 SARAFQ96BY9 339 aa6.18□□□□□ -1.42
VPS13C-208ENST00000559119 PGBD1Q96JS3 809 aa6.18□□□□□ -1.42
VPS13C-208ENST00000559119 ZNF277Q9NRM2 450 aaPredicted RBP6.18□□□□□ -1.42
VPS13C-208ENST00000559119 SETD1BQ9UPS6 1966 aaKnown RBP6.18□□□□□ -1.42
VPS13C-208ENST00000559119 WASP42768 502 aa6.17□□□□□ -1.42
VPS13C-208ENST00000559119 SOX10P56693 466 aa6.17□□□□□ -1.42
VPS13C-208ENST00000559119 ERVK-21P61565 698 aa6.17□□□□□ -1.42
VPS13C-208ENST00000559119 PTPRRQ15256 657 aa6.17□□□□□ -1.42
VPS13C-208ENST00000559119 TSHZ1Q6ZSZ6 1077 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms