RNA–Protein interactions for RNA: ENST00000558739.1

SMAD3-206, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-206ENST00000558739 ELF2Q15723 593 aa13.16□□□□□ -0.3
SMAD3-206ENST00000558739 GLRA4Q5JXX5 417 aa13.16□□□□□ -0.3
SMAD3-206ENST00000558739 SLC8B1Q6J4K2 584 aa13.16□□□□□ -0.3
SMAD3-206ENST00000558739 PDXDC1Q6P996 788 aa13.16□□□□□ -0.3
SMAD3-206ENST00000558739 SLC27A1Q6PCB7 646 aa13.16□□□□□ -0.3
SMAD3-206ENST00000558739 HACE1Q8IYU2 909 aa13.16□□□□□ -0.3
SMAD3-206ENST00000558739 ZNF461Q8TAF7 563 aa13.16□□□□□ -0.3
SMAD3-206ENST00000558739 ETNPPLQ8TBG4 499 aa13.16□□□□□ -0.3
SMAD3-206ENST00000558739 MSANTD3Q96H12 275 aa13.16□□□□□ -0.3
SMAD3-206ENST00000558739 RBM28Q9NW13 759 aaKnown RBP13.16□□□□□ -0.3
SMAD3-206ENST00000558739 SLC8A2Q9UPR5 921 aa13.16□□□□□ -0.3
SMAD3-206ENST00000558739 USP20Q9Y2K6 914 aa13.16□□□□□ -0.3
SMAD3-206ENST00000558739 RAXQ9Y2V3 346 aa13.16□□□□□ -0.3
SMAD3-206ENST00000558739 BACE2Q9Y5Z0 518 aa13.16□□□□□ -0.3
SMAD3-206ENST00000558739 ZMYM2Q9UBW7 1377 aa13.16□□□□□ -0.3
SMAD3-206ENST00000558739 SHROOM3Q8TF72 1996 aa13.16□□□□□ -0.3
SMAD3-206ENST00000558739 PTPRDP23468 1912 aa13.15□□□□□ -0.3
SMAD3-206ENST00000558739 EIF4E1BA6NMX2 242 aaKnown RBP13.15□□□□□ -0.3
SMAD3-206ENST00000558739 ZNF197O14709 1029 aa13.15□□□□□ -0.3
SMAD3-206ENST00000558739 KHNYNO15037 678 aaKnown RBP13.15□□□□□ -0.3
SMAD3-206ENST00000558739 RNF40O75150 1001 aa13.15□□□□□ -0.3
SMAD3-206ENST00000558739 B3GAT3O94766 335 aa13.15□□□□□ -0.3
SMAD3-206ENST00000558739 BCKDHBP21953 392 aa13.15□□□□□ -0.3
SMAD3-206ENST00000558739 CLCNKBP51801 687 aa13.15□□□□□ -0.3
SMAD3-206ENST00000558739 TWF1Q12792 350 aa13.15□□□□□ -0.3
SMAD3-206ENST00000558739 CYP4A22Q5TCH4 519 aa13.15□□□□□ -0.3
SMAD3-206ENST00000558739 C1orf228Q6PIY5 440 aa13.15□□□□□ -0.3
SMAD3-206ENST00000558739 RTL10Q7L3V2 364 aa13.15□□□□□ -0.3
SMAD3-206ENST00000558739 TCEAL8Q8IYN2 117 aa13.15□□□□□ -0.3
SMAD3-206ENST00000558739 MDM1Q8TC05 714 aa13.15□□□□□ -0.3
SMAD3-206ENST00000558739 C6orf50Q9HD87 102 aa13.15□□□□□ -0.3
SMAD3-206ENST00000558739 FSCN3Q9NQT6 498 aa13.15□□□□□ -0.3
SMAD3-206ENST00000558739 A0A1B0GUA9 196 aa13.14□□□□□ -0.31
SMAD3-206ENST00000558739 A0A1W2PRU2 124 aa13.14□□□□□ -0.31
SMAD3-206ENST00000558739 OTOL1A6NHN0 477 aaPredicted RBP13.14□□□□□ -0.31
SMAD3-206ENST00000558739 GOLGA8AA7E2F4 631 aa13.14□□□□□ -0.31
SMAD3-206ENST00000558739 GOLGA8BA8MQT2 603 aa13.14□□□□□ -0.31
SMAD3-206ENST00000558739 ZBTB43O43298 467 aa13.14□□□□□ -0.31
SMAD3-206ENST00000558739 PRAMEF12O95522 483 aa13.14□□□□□ -0.31
SMAD3-206ENST00000558739 EGFP01133 1207 aa13.14□□□□□ -0.31
SMAD3-206ENST00000558739 THP07101 528 aa13.14□□□□□ -0.31
SMAD3-206ENST00000558739 ATF2P15336 505 aa13.14□□□□□ -0.31
SMAD3-206ENST00000558739 U2AF2P26368 475 aaKnown RBP eCLIP13.14□□□□□ -0.31
SMAD3-206ENST00000558739 RFC5P40937 340 aa13.14□□□□□ -0.31
SMAD3-206ENST00000558739 QARSP47897 775 aaKnown RBP13.14□□□□□ -0.31
SMAD3-206ENST00000558739 EPHA5P54756 1037 aa13.14□□□□□ -0.31
SMAD3-206ENST00000558739 CACNB1Q02641 598 aaPredicted RBP13.14□□□□□ -0.31
SMAD3-206ENST00000558739 PMS2CLQ68D20 193 aa13.14□□□□□ -0.31
SMAD3-206ENST00000558739 ANKS3Q6ZW76 656 aa13.14□□□□□ -0.31
SMAD3-206ENST00000558739 PIP4P1Q86T03 277 aa13.14□□□□□ -0.31
SMAD3-206ENST00000558739 ARID3BQ8IVW6 561 aaPredicted RBP13.14□□□□□ -0.31
SMAD3-206ENST00000558739 SYNPOQ8N3V7 929 aa13.14□□□□□ -0.31
SMAD3-206ENST00000558739 GLIS3Q8NEA6 775 aa13.14□□□□□ -0.31
SMAD3-206ENST00000558739 FBRSL1Q9HCM7 1045 aaKnown RBP13.14□□□□□ -0.31
SMAD3-206ENST00000558739 ASAH2Q9NR71 780 aa13.14□□□□□ -0.31
SMAD3-206ENST00000558739 VAV3Q9UKW4 847 aa13.14□□□□□ -0.31
SMAD3-206ENST00000558739 FLNCQ14315 2725 aa13.13□□□□□ -0.31
SMAD3-206ENST00000558739 CCDC194A0A1B0GVG4 234 aa13.13□□□□□ -0.31
SMAD3-206ENST00000558739 FAM221BA6H8Z2 402 aa13.13□□□□□ -0.31
SMAD3-206ENST00000558739 SLC27A2O14975 620 aa13.13□□□□□ -0.31
SMAD3-206ENST00000558739 SLC37A4O43826 429 aa13.13□□□□□ -0.31
SMAD3-206ENST00000558739 RHOBTB1O94844 696 aa13.13□□□□□ -0.31
SMAD3-206ENST00000558739 IGHDP01880 384 aa13.13□□□□□ -0.31
SMAD3-206ENST00000558739 EDN1P05305 212 aa13.13□□□□□ -0.31
SMAD3-206ENST00000558739 ELF1P32519 619 aa13.13□□□□□ -0.31
SMAD3-206ENST00000558739 ADD1P35611 737 aaKnown RBP13.13□□□□□ -0.31
SMAD3-206ENST00000558739 LARP1BQ659C4 914 aaKnown RBP13.13□□□□□ -0.31
SMAD3-206ENST00000558739 CYP2U1Q7Z449 544 aa13.13□□□□□ -0.31
SMAD3-206ENST00000558739 IFNLR1Q8IU57 520 aaPredicted RBP13.13□□□□□ -0.31
SMAD3-206ENST00000558739 TMC8Q8IU68 726 aa13.13□□□□□ -0.31
SMAD3-206ENST00000558739 TMEM209Q96SK2 561 aa13.13□□□□□ -0.31
SMAD3-206ENST00000558739 MTRQ99707 1265 aa13.13□□□□□ -0.31
SMAD3-206ENST00000558739 LXNQ9BS40 222 aa13.13□□□□□ -0.31
SMAD3-206ENST00000558739 LRRC3Q9BY71 257 aa13.13□□□□□ -0.31
SMAD3-206ENST00000558739 SMG9Q9H0W8 520 aaKnown RBP13.13□□□□□ -0.31
SMAD3-206ENST00000558739 RGL1Q9NZL6 768 aa13.13□□□□□ -0.31
SMAD3-206ENST00000558739 TEP1Q99973 2627 aaKnown RBP13.13□□□□□ -0.31
SMAD3-206ENST00000558739 VNN2O95498 520 aa13.12□□□□□ -0.31
SMAD3-206ENST00000558739 GLRA2P23416 452 aa13.12□□□□□ -0.31
SMAD3-206ENST00000558739 YWHABP31946 246 aaKnown RBP13.12□□□□□ -0.31
SMAD3-206ENST00000558739 SOX4Q06945 474 aaPredicted RBP13.12□□□□□ -0.31
SMAD3-206ENST00000558739 PCBP1Q15365 356 aaKnown RBP eCLIP13.12□□□□□ -0.31
SMAD3-206ENST00000558739 UPP1Q16831 310 aa13.12□□□□□ -0.31
SMAD3-206ENST00000558739 Q4G0T1 1027 aa13.12□□□□□ -0.31
SMAD3-206ENST00000558739 XKR9Q5GH70 373 aa13.12□□□□□ -0.31
SMAD3-206ENST00000558739 TMEM196Q5HYL7 178 aa13.12□□□□□ -0.31
SMAD3-206ENST00000558739 TTC22Q5TAA0 569 aa13.12□□□□□ -0.31
SMAD3-206ENST00000558739 RAB44Q7Z6P3 723 aaPredicted RBP13.12□□□□□ -0.31
SMAD3-206ENST00000558739 NOSTRINQ8IVI9 506 aa13.12□□□□□ -0.31
SMAD3-206ENST00000558739 TBCKQ8TEA7 893 aa13.12□□□□□ -0.31
SMAD3-206ENST00000558739 TCP11Q8WWU5 503 aa13.12□□□□□ -0.31
SMAD3-206ENST00000558739 EZH1Q92800 747 aaPredicted RBP13.12□□□□□ -0.31
SMAD3-206ENST00000558739 TPSD1Q9BZJ3 242 aa13.12□□□□□ -0.31
SMAD3-206ENST00000558739 PDZD7Q9H5P4 517 aa13.12□□□□□ -0.31
SMAD3-206ENST00000558739 VPS54Q9P1Q0 977 aa13.12□□□□□ -0.31
SMAD3-206ENST00000558739 GDAQ9Y2T3 454 aa13.12□□□□□ -0.31
SMAD3-206ENST00000558739 PTPRBP23467 1997 aa13.12□□□□□ -0.31
SMAD3-206ENST00000558739 ATXN2Q99700 1313 aaKnown RBP13.12□□□□□ -0.31
SMAD3-206ENST00000558739 MYO9AB2RTY4 2548 aa13.11□□□□□ -0.31
SMAD3-206ENST00000558739 SPTAN1Q13813 2472 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms