RNA–Protein interactions for RNA: ENST00000558471.5

LRRC28-206, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 793 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-206ENST00000558471 INTS13Q9NVM9 706 aa13.52□□□□□ -0.25
LRRC28-206ENST00000558471 SSX2IPQ9Y2D8 614 aa13.52□□□□□ -0.25
LRRC28-206ENST00000558471 PTPRJQ12913 1337 aa13.52□□□□□ -0.25
LRRC28-206ENST00000558471 PRUNE2Q8WUY3 3088 aa13.52□□□□□ -0.25
LRRC28-206ENST00000558471 PPP1R3GB7ZBB8 358 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 NCK2O43639 380 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 CLASP2O75122 1294 aaKnown RBP13.51□□□□□ -0.25
LRRC28-206ENST00000558471 DLATP10515 647 aaKnown RBP13.51□□□□□ -0.25
LRRC28-206ENST00000558471 FGFR3P22607 806 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 NR2F2P24468 414 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 TKTP29401 623 aaKnown RBP13.51□□□□□ -0.25
LRRC28-206ENST00000558471 MCM4P33991 863 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 LTBRP36941 435 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 PMS1P54277 932 aaKnown RBP13.51□□□□□ -0.25
LRRC28-206ENST00000558471 RBM10P98175 930 aaKnown RBP13.51□□□□□ -0.25
LRRC28-206ENST00000558471 ADAM9Q13443 819 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 EDRF1Q3B7T1 1238 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 ANKRD40Q6AI12 368 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 PRSS55Q6UWB4 352 aaPredicted RBP13.51□□□□□ -0.25
LRRC28-206ENST00000558471 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.51□□□□□ -0.25
LRRC28-206ENST00000558471 GPR65Q8IYL9 337 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 EFHBQ8N7U6 833 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 C1orf127Q8N9H9 656 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 VN1R2Q8NFZ6 395 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 CXorf38Q8TB03 319 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 LNX1Q8TBB1 728 aaPredicted RBP13.51□□□□□ -0.25
LRRC28-206ENST00000558471 PLEKHO2Q8TD55 490 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 HLA-CQ95604 372 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 PABPC5Q96DU9 382 aaKnown RBP13.51□□□□□ -0.25
LRRC28-206ENST00000558471 DHTKD1Q96HY7 919 aaPredicted RBP13.51□□□□□ -0.25
LRRC28-206ENST00000558471 SUSD3Q96L08 255 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 CDCA3Q99618 268 aaPredicted RBP13.51□□□□□ -0.25
LRRC28-206ENST00000558471 RXFP1Q9HBX9 757 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 CLDND1Q9NY35 253 aa13.51□□□□□ -0.25
LRRC28-206ENST00000558471 PLXNA3P51805 1871 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 TRIM49BA6NDI0 452 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 SPTLC1O15269 473 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 TEX28O15482 410 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 AKAP3O75969 853 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 GLP2RO95838 553 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 ITGB3P05106 788 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 RPL17P18621 184 aaKnown RBP13.5□□□□□ -0.25
LRRC28-206ENST00000558471 TNNI1P19237 187 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 CCNE1P24864 410 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 RPL13P26373 211 aaKnown RBP13.5□□□□□ -0.25
LRRC28-206ENST00000558471 AARSP49588 968 aaKnown RBP eCLIP13.5□□□□□ -0.25
LRRC28-206ENST00000558471 LILRA4P59901 499 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 DLX2Q07687 328 aaPredicted RBP13.5□□□□□ -0.25
LRRC28-206ENST00000558471 STIM1Q13586 685 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 KCNC3Q14003 757 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 DUOXA2Q1HG44 320 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 EP400NLQ6ZTU2 488 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 WDR49Q8IV35 697 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 CSGALNACT2Q8N6G5 542 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 TRIML1Q8N9V2 468 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 PARD3BQ8TEW8 1205 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 PIK3R5Q8WYR1 880 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 ZNF516Q92618 1163 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 EEF2KMTQ96G04 330 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 ANKRD36BP1Q96IX9 119 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 FNBP1Q96RU3 617 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 CGRRF1Q99675 332 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 EMILIN2Q9BXX0 1053 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 MTMR12Q9C0I1 747 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 UBE2ZQ9H832 354 aaPredicted RBP13.5□□□□□ -0.25
LRRC28-206ENST00000558471 SIX4Q9UIU6 781 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 COG5Q9UP83 839 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 AGAP1Q9UPQ3 857 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 FRMD4BQ9Y2L6 1034 aa13.5□□□□□ -0.25
LRRC28-206ENST00000558471 MTCL1Q9Y4B5 1905 aaKnown RBP13.5□□□□□ -0.25
LRRC28-206ENST00000558471 M0QZQ0 153 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 PSMA7O14818 248 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 SYN3O14994 580 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 TNNC2P02585 160 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 TMEM191BP0C7N4 346 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 KLRC2P26717 231 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 POLR2BP30876 1174 aaKnown RBP13.49□□□□□ -0.25
LRRC28-206ENST00000558471 PPP1R2P41236 205 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 DLG4P78352 724 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 TFF2Q03403 129 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 PSMD5Q16401 504 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 KLHL10Q6JEL2 608 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 LLGL2Q6P1M3 1020 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 DSTYKQ6XUX3 929 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 SLC22A17Q8WUG5 538 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 BORCS6Q96GS4 357 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 TSG101Q99816 390 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 CLSTN3Q9BQT9 956 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.49□□□□□ -0.25
LRRC28-206ENST00000558471 CLEC1BQ9P126 229 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 FNIP2Q9P278 1114 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 ITGA11Q9UKX5 1188 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 PCDHB8Q9UN66 801 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 HCFC2Q9Y5Z7 792 aa13.49□□□□□ -0.25
LRRC28-206ENST00000558471 LRRIQ3A6PVS8 624 aaPredicted RBP13.48□□□□□ -0.25
LRRC28-206ENST00000558471 CETN3O15182 167 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 MAPK13O15264 365 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 ADAM12O43184 909 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 TBX10O75333 385 aa13.48□□□□□ -0.25
LRRC28-206ENST00000558471 CST3P01034 146 aaPredicted RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms