RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 OTUD6AQ7L8S5 288 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 C4orf19Q8IY42 314 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 SMARCD2Q92925 531 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 BRF1Q92994 677 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 LSM14BQ9BX40 385 aaKnown RBP10.28□□□□□ -0.76
SYNE2-224ENST00000557024 SMOC1Q9H4F8 434 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 TRPV5Q9NQA5 729 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 NCANO14594 1321 aa10.28□□□□□ -0.76
SYNE2-224ENST00000557024 ARHGEF37A1IGU5 675 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 SLC38A8A6NNN8 435 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 SMAPO00193 183 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 ZNF197O14709 1029 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 RECQL4O94761 1208 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 PAPSS2O95340 614 aaPredicted RBP10.27□□□□□ -0.77
SYNE2-224ENST00000557024 THP07101 528 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 GLRA2P23416 452 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 ELF1P32519 619 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 SOX9P48436 509 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 ROR1Q01973 937 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 CYP4A11Q02928 519 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 SPIRE1Q08AE8 756 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 FOXC1Q12948 553 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 CTTNQ14247 550 aaKnown RBP10.27□□□□□ -0.77
SYNE2-224ENST00000557024 ANKRD1Q15327 319 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 NAB2Q15742 525 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 NTRK3Q16288 839 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 WDR44Q5JSH3 913 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 MOXD1Q6UVY6 613 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 PDZD4Q76G19 769 aaPredicted RBP10.27□□□□□ -0.77
SYNE2-224ENST00000557024 KBTBD6Q86V97 674 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 WDR5BQ86VZ2 330 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 HSCBQ8IWL3 235 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 KDF1Q8NAX2 398 aaPredicted RBP10.27□□□□□ -0.77
SYNE2-224ENST00000557024 DEPDC1BQ8WUY9 529 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 DYDC2Q96IM9 177 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 RNF26Q9BY78 433 aaPredicted RBP10.27□□□□□ -0.77
SYNE2-224ENST00000557024 SNTG2Q9NY99 539 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 PCDHA4Q9UN74 947 aa10.27□□□□□ -0.77
SYNE2-224ENST00000557024 MTCL1Q9Y4B5 1905 aaKnown RBP10.27□□□□□ -0.77
SYNE2-224ENST00000557024 F5P12259 2224 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 ARNTLO00327 626 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 GIPC1O14908 333 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 TBX3O15119 743 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 B3GAT3O94766 335 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 EPN2O95208 641 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 GJA1P17302 382 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 ARL2P36404 184 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 PXNP49023 591 aaPredicted RBP10.26□□□□□ -0.77
SYNE2-224ENST00000557024 MCM2P49736 904 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 NOVA1P51513 510 aaKnown RBP10.26□□□□□ -0.77
SYNE2-224ENST00000557024 KPNA1P52294 538 aaPredicted RBP10.26□□□□□ -0.77
SYNE2-224ENST00000557024 ARPP19P56211 112 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 POU5F1BQ06416 359 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 BECN1Q14457 450 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 EPHA7Q15375 998 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 INF2Q27J81 1249 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 CYP4A22Q5TCH4 519 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 RNF43Q68DV7 783 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 NCAPH2Q6IBW4 605 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 TCEAL6Q6IPX3 200 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 TXNDC11Q6PKC3 985 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 ANKS3Q6ZW76 656 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 NOSTRINQ8IVI9 506 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 TPH2Q8IWU9 490 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 BLIDQ8IZY5 108 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 ZNF461Q8TAF7 563 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 TTC8Q8TAM2 541 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 ZSCAN18Q8TBC5 510 aaPredicted RBP10.26□□□□□ -0.77
SYNE2-224ENST00000557024 CSGALNACT1Q8TDX6 532 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 TCEAL3Q969E4 200 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 FAM20AQ96MK3 541 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 KIF2CQ99661 725 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 NFKBIZQ9BYH8 718 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 ZSWIM4Q9H7M6 989 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 CYP4F11Q9HBI6 524 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 NCOA5Q9HCD5 579 aaKnown RBP10.26□□□□□ -0.77
SYNE2-224ENST00000557024 KCNMB3Q9NPA1 279 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 SH3GLB2Q9NR46 395 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 BACE2Q9Y5Z0 518 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 NID2Q14112 1375 aa10.26□□□□□ -0.77
SYNE2-224ENST00000557024 WDR81Q562E7 1941 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 NOTCH4Q99466 2003 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 LRRIQ4A6NIV6 560 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 HEPACAM2A8MVW5 462 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 M0R2N6 131 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 EXTL3O43909 919 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 MOSPD3O75425 235 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 RPP40O75818 363 aaKnown RBP10.25□□□□□ -0.77
SYNE2-224ENST00000557024 MICAL2O94851 1124 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 SEC24AO95486 1093 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 PRKCBP05771 671 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 MYL4P12829 197 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 IFNAR1P17181 557 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 HOXA6P31267 233 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 BRCC3P46736 316 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 RAP1GAPP47736 663 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 CLCNKBP51801 687 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 ZNF252P-AS1Q0IIN9 211 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 GLRA4Q5JXX5 417 aa10.25□□□□□ -0.77
SYNE2-224ENST00000557024 CD300LGQ6UXG3 332 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms