RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	TRIM15	Q9C019	465 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	ARHGAP26	Q9UNA1	814 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	NRXN3	Q9Y4C0	1643 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	WDR64	B1ANS9	1081 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	UBAP1L	F5GYI3	381 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	APOL1	O14791	398 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	PPIP5K2	O43314	1243 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	KRT37	O76014	449 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	P4HB	P07237	508 aa	Known RBP	5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	SRGAP2C	P0DJJ0	459 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	RARA	P10276	462 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	PYGM	P11217	842 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	ZNF200	P98182	395 aa	Predicted RBP	5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	ACAD10	Q6JQN1	1059 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	C3orf62	Q6ZUJ4	267 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	SULF1	Q8IWU6	871 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	MSL3	Q8N5Y2	521 aa	Known RBP	5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	RBBP8NL	Q8NC74	664 aa	Predicted RBP	5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	MCU	Q8NE86	351 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	PARD3B	Q8TEW8	1205 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	ATXN2L	Q8WWM7	1075 aa	Known RBP	5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	DCLK3	Q9C098	648 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	MTMR4	Q9NYA4	1195 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	C2CD2	Q9Y426	696 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	MYH15	Q9Y2K3	1946 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	GIPC1	O14908	333 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	ZNF263	O14978	683 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	FOXP2	O15409	715 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	MSH4	O15457	936 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	SERPINB2	P05120	415 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	AVPR1A	P37288	418 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	SLC12A3	P55017	1021 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	ZNF543	Q08ER8	600 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	CNGA3	Q16281	694 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	SNRNP35	Q16560	246 aa	Known RBP	5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	PPP6R3	Q5H9R7	873 aa	Predicted RBP	5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	C3orf67	Q6ZVT6	689 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	BRINP3	Q76B58	766 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	KCNK18	Q7Z418	384 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	SCUBE1	Q8IWY4	988 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	FBXO25	Q8TCJ0	367 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	MTR	Q99707	1265 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	HAUS8	Q9BT25	410 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	C10orf88	Q9H8K7	445 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	ERVK-5	Q9HDB9	667 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	AIPL1	Q9NZN9	384 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005		H0YCG3	227 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	HNRNPCL1	O60812	293 aa	Known RBP	5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	LGR5	O75473	907 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	ANXA13	P27216	316 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	PTPN4	P29074	926 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	SOX11	P35716	441 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	SERPINB5	P36952	375 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	ORC1	Q13415	861 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	EFTUD2	Q15029	972 aa	Known RBP eCLIP	5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	DLGAP5	Q15398	846 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	ZNF699	Q32M78	642 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	EDRF1	Q3B7T1	1238 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	SWT1	Q5T5J6	900 aa	Known RBP	5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	ERMARD	Q5T6L9	678 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	C11orf63	Q6NUN7	778 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	LRRC74B	Q6ZQY2	392 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	DNAAF3	Q8N9W5	541 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	BAP1	Q92560	729 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	FAM20A	Q96MK3	541 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	BTBD10	Q9BSF8	475 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	KLHL4	Q9C0H6	718 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	CD209	Q9NNX6	404 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	PAPOLB	Q9NRJ5	636 aa	Known RBP	5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	PDP2	Q9P2J9	529 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	HERC5	Q9UII4	1024 aa	Known RBP	5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	SALL4	Q9UJQ4	1053 aa		5.25	□□□□□ -1.57
SYNE2-223	ENST00000557005	WTIP	A6NIX2	430 aa	Predicted RBP	5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	WEE2	P0C1S8	567 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	ACADS	P16219	412 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	ALDH1B1	P30837	517 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	RAP1GAP	P47736	663 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	JAK3	P52333	1124 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	ESRRG	P62508	458 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	FAM160B1	Q5W0V3	765 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	ANO5	Q75V66	913 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	ARHGAP22	Q7Z5H3	698 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	LCA5	Q86VQ0	697 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	RYBP	Q8N488	228 aa	Predicted RBP	5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	NEDD1	Q8NHV4	660 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	GDPD5	Q8WTR4	605 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	DHX38	Q92620	1227 aa	Known RBP	5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	FAM81B	Q96LP2	452 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	WWP1	Q9H0M0	922 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	GAN	Q9H2C0	597 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	LZTS1	Q9Y250	596 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005		H0YIN7	160 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	DNM1L	O00429	736 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	DDX3X	O00571	662 aa	Known RBP eCLIP	5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	DDX3Y	O15523	660 aa	Known RBP	5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	AKAP3	O75969	853 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	ATP6V1B1	P15313	513 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	FNTA	P49354	379 aa		5.24	□□□□□ -1.57
SYNE2-223	ENST00000557005	STX1B	P61266	288 aa		5.24	□□□□□ -1.57

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