RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 SIM2Q14190 667 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-223ENST00000556689 ME3Q16798 604 aa13.87□□□□□ -0.19
SHMT2-223ENST00000556689 CTXN3Q4LDR2 81 aa13.87□□□□□ -0.19
SHMT2-223ENST00000556689 MFSD6LQ8IWD5 586 aa13.87□□□□□ -0.19
SHMT2-223ENST00000556689 CEP120Q8N960 986 aa13.87□□□□□ -0.19
SHMT2-223ENST00000556689 LEMD2Q8NC56 503 aa13.87□□□□□ -0.19
SHMT2-223ENST00000556689 NSUN7Q8NE18 718 aaKnown RBP13.87□□□□□ -0.19
SHMT2-223ENST00000556689 NETO1Q8TDF5 533 aa13.87□□□□□ -0.19
SHMT2-223ENST00000556689 ZMAT2Q96NC0 199 aaKnown RBP13.87□□□□□ -0.19
SHMT2-223ENST00000556689 ACAP3Q96P50 834 aa13.87□□□□□ -0.19
SHMT2-223ENST00000556689 GPR88Q9GZN0 384 aa13.87□□□□□ -0.19
SHMT2-223ENST00000556689 BHMT2Q9H2M3 363 aa13.87□□□□□ -0.19
SHMT2-223ENST00000556689 TMEM134Q9H6X4 195 aa13.87□□□□□ -0.19
SHMT2-223ENST00000556689 TRPV4Q9HBA0 871 aa13.87□□□□□ -0.19
SHMT2-223ENST00000556689 PTPRHQ9HD43 1115 aa13.87□□□□□ -0.19
SHMT2-223ENST00000556689 AFF4Q9UHB7 1163 aaKnown RBP13.87□□□□□ -0.19
SHMT2-223ENST00000556689 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.87□□□□□ -0.19
SHMT2-223ENST00000556689 PATJQ8NI35 1801 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-223ENST00000556689 CCDC169A6NNP5 214 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 SLC30A4O14863 429 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 HRO43593 1189 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 MOSPD3O75425 235 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 OR52Z1P0C646 297 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 MYL4P12829 197 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 MARCKSP29966 332 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-223ENST00000556689 CNR2P34972 360 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 SATB1Q01826 763 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 SAFBQ15424 915 aaKnown RBP eCLIP13.86□□□□□ -0.19
SHMT2-223ENST00000556689 ZNF174Q15697 407 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 ZNF568Q3ZCX4 644 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 HAUS3Q68CZ6 603 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 APPL2Q8NEU8 664 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 ZSCAN18Q8TBC5 510 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-223ENST00000556689 CSGALNACT1Q8TDX6 532 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 GTF3C6Q969F1 213 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 E2F7Q96AV8 911 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 SUSD3Q96L08 255 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 TCHPQ9BT92 498 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 MRPL4Q9BYD3 311 aaKnown RBP13.86□□□□□ -0.19
SHMT2-223ENST00000556689 CDT1Q9H211 546 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 ASAH2Q9NR71 780 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 SEMA4GQ9NTN9 838 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 CEP72Q9P209 647 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 VWA8A3KMH1 1905 aa13.86□□□□□ -0.19
SHMT2-223ENST00000556689 HEPACAM2A8MVW5 462 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 GJA1P17302 382 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 CCT6AP40227 531 aaKnown RBP13.85□□□□□ -0.19
SHMT2-223ENST00000556689 NPTX2P47972 431 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 EPHA5P54756 1037 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 PEX3P56589 373 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 ANAPC15P60006 121 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 GAS6Q14393 721 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 CSRP2Q16527 193 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 ECM1Q16610 540 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 PPM1JQ5JR12 505 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 ZNF280DQ6N043 979 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 C1orf228Q6PIY5 440 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 YAF2Q8IY57 180 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 SPEM1Q8N4L4 309 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 DDX12PQ92771 950 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 C18orf25Q96B23 403 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-223ENST00000556689 MSANTD3Q96H12 275 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 CHAMP1Q96JM3 812 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 TBC1D32Q96NH3 1257 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 SLITRK6Q9H5Y7 841 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 C8orf33Q9H7E9 229 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-223ENST00000556689 KIAA1024Q9UPX6 916 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 PHLPP2Q6ZVD8 1323 aa13.85□□□□□ -0.19
SHMT2-223ENST00000556689 CHURC1-FNTBB4DL54 471 aa13.84□□□□□ -0.19
SHMT2-223ENST00000556689 ARNTLO00327 626 aa13.84□□□□□ -0.19
SHMT2-223ENST00000556689 CHADO15335 359 aa13.84□□□□□ -0.19
SHMT2-223ENST00000556689 FOXD2O60548 495 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-223ENST00000556689 JAK2O60674 1132 aa13.84□□□□□ -0.19
SHMT2-223ENST00000556689 LARGE1O95461 756 aa13.84□□□□□ -0.19
SHMT2-223ENST00000556689 MCF2P10911 925 aa13.84□□□□□ -0.19
SHMT2-223ENST00000556689 MCM4P33991 863 aa13.84□□□□□ -0.19
SHMT2-223ENST00000556689 FNTBP49356 437 aa13.84□□□□□ -0.19
SHMT2-223ENST00000556689 KPNA1P52294 538 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-223ENST00000556689 PTGDRQ13258 359 aa13.84□□□□□ -0.19
SHMT2-223ENST00000556689 ORC2Q13416 577 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-223ENST00000556689 LRRC32Q14392 662 aa13.84□□□□□ -0.19
SHMT2-223ENST00000556689 TEAD2Q15562 447 aa13.84□□□□□ -0.19
SHMT2-223ENST00000556689 ST3GAL2Q16842 350 aa13.84□□□□□ -0.19
SHMT2-223ENST00000556689 RNF19BQ6ZMZ0 732 aa13.84□□□□□ -0.19
SHMT2-223ENST00000556689 PRR23CQ6ZRP0 262 aa13.84□□□□□ -0.19
SHMT2-223ENST00000556689 TARS2Q9BW92 718 aaKnown RBP13.84□□□□□ -0.19
SHMT2-223ENST00000556689 CNTN3Q9P232 1028 aa13.84□□□□□ -0.19
SHMT2-223ENST00000556689 RBM19Q9Y4C8 960 aaKnown RBP13.84□□□□□ -0.19
SHMT2-223ENST00000556689 CPB1P15086 417 aa13.83□□□□□ -0.2
SHMT2-223ENST00000556689 GUCY1B3Q02153 619 aa13.83□□□□□ -0.2
SHMT2-223ENST00000556689 DMWDQ09019 674 aa13.83□□□□□ -0.2
SHMT2-223ENST00000556689 DMP1Q13316 513 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-223ENST00000556689 PDIA5Q14554 519 aa13.83□□□□□ -0.2
SHMT2-223ENST00000556689 MPZL3Q6UWV2 235 aa13.83□□□□□ -0.2
SHMT2-223ENST00000556689 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-223ENST00000556689 LONP2Q86WA8 852 aa13.83□□□□□ -0.2
SHMT2-223ENST00000556689 SHKBP1Q8TBC3 707 aa13.83□□□□□ -0.2
SHMT2-223ENST00000556689 DDX1Q92499 740 aaKnown RBP13.83□□□□□ -0.2
SHMT2-223ENST00000556689 OXCT2Q9BYC2 517 aaPredicted RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms