RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 RBM12Q9NTZ6 932 aaKnown RBP4.8□□□□□ -1.64
SCFD1-218ENST00000556256 CACNA1IQ9P0X4 2223 aa4.8□□□□□ -1.64
SCFD1-218ENST00000556256 A0A1W2PS29 197 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 CDHR4A6H8M9 788 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 NTN1O95631 604 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 CBSLP0DN79 551 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 ALAS1P13196 640 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 ENPP1P22413 925 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 CCKBRP32239 447 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 CBSP35520 551 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 FOXG1P55316 489 aaPredicted RBP4.79□□□□□ -1.64
SCFD1-218ENST00000556256 PPP3CAQ08209 521 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 TMEM119Q4V9L6 283 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 GJC2Q5T442 439 aaPredicted RBP4.79□□□□□ -1.64
SCFD1-218ENST00000556256 ZNF517Q6ZMY9 492 aaPredicted RBP4.79□□□□□ -1.64
SCFD1-218ENST00000556256 RASAL3Q86YV0 1011 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 AHI1Q8N157 1196 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 PPM1KQ8N3J5 372 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 CASKIN2Q8WXE0 1202 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 NINJ1Q92982 152 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 FATE1Q969F0 183 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 TMEM125Q96AQ2 219 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 PGBD1Q96JS3 809 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 TARS2Q9BW92 718 aaKnown RBP4.79□□□□□ -1.64
SCFD1-218ENST00000556256 GREM2Q9H772 168 aa4.79□□□□□ -1.64
SCFD1-218ENST00000556256 PRAMEF33A0A0G2JMD5 474 aa4.78□□□□□ -1.64
SCFD1-218ENST00000556256 TCRBV7S2A1N4TA0A589 114 aa4.78□□□□□ -1.64
SCFD1-218ENST00000556256 PRAMEF10O60809 474 aa4.78□□□□□ -1.64
SCFD1-218ENST00000556256 CHRM2P08172 466 aa4.78□□□□□ -1.64
SCFD1-218ENST00000556256 FCER1AP12319 257 aa4.78□□□□□ -1.64
SCFD1-218ENST00000556256 TXNRD1Q16881 649 aa4.78□□□□□ -1.64
SCFD1-218ENST00000556256 ATP13A4Q4VNC1 1196 aa4.78□□□□□ -1.64
SCFD1-218ENST00000556256 RUSC1-AS1Q66K80 236 aa4.78□□□□□ -1.64
SCFD1-218ENST00000556256 TBC1D15Q8TC07 691 aa4.78□□□□□ -1.64
SCFD1-218ENST00000556256 ADGRE3Q9BY15 652 aa4.78□□□□□ -1.64
SCFD1-218ENST00000556256 DMRT3Q9NQL9 472 aa4.78□□□□□ -1.64
SCFD1-218ENST00000556256 TMEM140Q9NV12 185 aa4.78□□□□□ -1.64
SCFD1-218ENST00000556256 VSX1Q9NZR4 365 aaPredicted RBP4.78□□□□□ -1.64
SCFD1-218ENST00000556256 TEX33O43247 280 aa4.77□□□□□ -1.65
SCFD1-218ENST00000556256 LATS1O95835 1130 aa4.77□□□□□ -1.65
SCFD1-218ENST00000556256 FPGSQ05932 587 aa4.77□□□□□ -1.65
SCFD1-218ENST00000556256 MUM1L1Q5H9M0 696 aa4.77□□□□□ -1.65
SCFD1-218ENST00000556256 SLC9A4Q6AI14 798 aa4.77□□□□□ -1.65
SCFD1-218ENST00000556256 DHX37Q8IY37 1157 aaKnown RBP4.77□□□□□ -1.65
SCFD1-218ENST00000556256 MYCBPAPQ8TBZ2 947 aa4.77□□□□□ -1.65
SCFD1-218ENST00000556256 MRFAP1L1Q96HT8 127 aa4.77□□□□□ -1.65
SCFD1-218ENST00000556256 ACAP3Q96P50 834 aa4.77□□□□□ -1.65
SCFD1-218ENST00000556256 DNAJC2Q99543 621 aaKnown RBP4.77□□□□□ -1.65
SCFD1-218ENST00000556256 PADI4Q9UM07 663 aa4.77□□□□□ -1.65
SCFD1-218ENST00000556256 RUVBL1Q9Y265 456 aaKnown RBP4.77□□□□□ -1.65
SCFD1-218ENST00000556256 CNTNAP2Q9UHC6 1331 aa4.76□□□□□ -1.65
SCFD1-218ENST00000556256 CCT4P50991 539 aaKnown RBP4.76□□□□□ -1.65
SCFD1-218ENST00000556256 RPS7P62081 194 aaKnown RBP4.76□□□□□ -1.65
SCFD1-218ENST00000556256 MRPS9P82933 396 aaKnown RBP4.76□□□□□ -1.65
SCFD1-218ENST00000556256 TKFCQ3LXA3 575 aa4.76□□□□□ -1.65
SCFD1-218ENST00000556256 FAM153CQ494X1 144 aa4.76□□□□□ -1.65
SCFD1-218ENST00000556256 CD300EQ496F6 205 aaPredicted RBP4.76□□□□□ -1.65
SCFD1-218ENST00000556256 MORN5Q5VZ52 161 aa4.76□□□□□ -1.65
SCFD1-218ENST00000556256 AWAT2Q6E213 333 aa4.76□□□□□ -1.65
SCFD1-218ENST00000556256 TECPR1Q7Z6L1 1165 aa4.76□□□□□ -1.65
SCFD1-218ENST00000556256 CLNKQ7Z7G1 428 aa4.76□□□□□ -1.65
SCFD1-218ENST00000556256 NEK8Q86SG6 692 aa4.76□□□□□ -1.65
SCFD1-218ENST00000556256 AUTS2Q8WXX7 1259 aa4.76□□□□□ -1.65
SCFD1-218ENST00000556256 SEMA4CQ9C0C4 833 aa4.76□□□□□ -1.65
SCFD1-218ENST00000556256 IFT122Q9HBG6 1241 aa4.76□□□□□ -1.65
SCFD1-218ENST00000556256 NRIP3Q9NQ35 241 aa4.76□□□□□ -1.65
SCFD1-218ENST00000556256 ZNF580Q9UK33 172 aa4.76□□□□□ -1.65
SCFD1-218ENST00000556256 TBC1D30Q9Y2I9 924 aa4.76□□□□□ -1.65
SCFD1-218ENST00000556256 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.75□□□□□ -1.65
SCFD1-218ENST00000556256 WDR27A2RRH5 827 aa4.75□□□□□ -1.65
SCFD1-218ENST00000556256 VWC2LB2RUY7 222 aa4.75□□□□□ -1.65
SCFD1-218ENST00000556256 GSPT1P15170 499 aaKnown RBP4.75□□□□□ -1.65
SCFD1-218ENST00000556256 KCNA2P16389 499 aa4.75□□□□□ -1.65
SCFD1-218ENST00000556256 SLC6A9P48067 706 aa4.75□□□□□ -1.65
SCFD1-218ENST00000556256 SEPT2Q15019 361 aa4.75□□□□□ -1.65
SCFD1-218ENST00000556256 MUM1Q2TAK8 710 aa4.75□□□□□ -1.65
SCFD1-218ENST00000556256 SLC44A4Q53GD3 710 aa4.75□□□□□ -1.65
SCFD1-218ENST00000556256 SUMO4Q6EEV6 95 aa4.75□□□□□ -1.65
SCFD1-218ENST00000556256 YTHDF3Q7Z739 585 aaKnown RBP4.75□□□□□ -1.65
SCFD1-218ENST00000556256 NIM1KQ8IY84 436 aa4.75□□□□□ -1.65
SCFD1-218ENST00000556256 SPATA3Q8NHX4 192 aa4.75□□□□□ -1.65
SCFD1-218ENST00000556256 FEZ1Q99689 392 aa4.75□□□□□ -1.65
SCFD1-218ENST00000556256 GCOM1H8Y6P7 765 aaPredicted RBP4.74□□□□□ -1.65
SCFD1-218ENST00000556256 KIAA0391O15091 583 aaKnown RBP4.74□□□□□ -1.65
SCFD1-218ENST00000556256 GPR32O75388 356 aa4.74□□□□□ -1.65
SCFD1-218ENST00000556256 AMY1AP04745 511 aa4.74□□□□□ -1.65
SCFD1-218ENST00000556256 EPHB2P29323 1055 aa4.74□□□□□ -1.65
SCFD1-218ENST00000556256 MPGP29372 298 aa4.74□□□□□ -1.65
SCFD1-218ENST00000556256 TKTP29401 623 aaKnown RBP4.74□□□□□ -1.65
SCFD1-218ENST00000556256 MCAMP43121 646 aa4.74□□□□□ -1.65
SCFD1-218ENST00000556256 HNRNPMP52272 730 aaKnown RBP eCLIP4.74□□□□□ -1.653e-6■■■■□ 25.9
SCFD1-218ENST00000556256 MTM1Q13496 603 aa4.74□□□□□ -1.65
SCFD1-218ENST00000556256 DYRK1AQ13627 763 aa4.74□□□□□ -1.65
SCFD1-218ENST00000556256 LCE1EQ5T753 118 aa4.74□□□□□ -1.65
SCFD1-218ENST00000556256 ZNF66Q6ZN08 573 aa4.74□□□□□ -1.65
SCFD1-218ENST00000556256 CLRN3Q8NCR9 226 aa4.74□□□□□ -1.65
SCFD1-218ENST00000556256 DENND1AQ8TEH3 1009 aa4.74□□□□□ -1.65
SCFD1-218ENST00000556256 CYFIP2Q96F07 1278 aa4.74□□□□□ -1.65
SCFD1-218ENST00000556256 TLR10Q9BXR5 811 aa4.74□□□□□ -1.65
SCFD1-218ENST00000556256 ACE2Q9BYF1 805 aaPredicted RBP4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms