RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 C11orf54Q9H0W9 315 aaPredicted RBP5.54□□□□□ -1.52
SCFD1-217ENST00000555953 ZNF277Q9NRM2 450 aaPredicted RBP5.54□□□□□ -1.52
SCFD1-217ENST00000555953 VSX1Q9NZR4 365 aaPredicted RBP5.54□□□□□ -1.52
SCFD1-217ENST00000555953 ARHGEF17Q96PE2 2063 aaPredicted RBP5.54□□□□□ -1.52
SCFD1-217ENST00000555953 POLR2AP24928 1970 aaKnown RBP5.53□□□□□ -1.52
SCFD1-217ENST00000555953 PROP1O75360 226 aa5.53□□□□□ -1.52
SCFD1-217ENST00000555953 HSD3B2P26439 372 aa5.53□□□□□ -1.52
SCFD1-217ENST00000555953 FOLR3P41439 243 aa5.53□□□□□ -1.52
SCFD1-217ENST00000555953 PROK1P58294 105 aa5.53□□□□□ -1.52
SCFD1-217ENST00000555953 CREMQ03060 361 aa5.53□□□□□ -1.52
SCFD1-217ENST00000555953 KIAA0895LQ68EN5 471 aa5.53□□□□□ -1.52
SCFD1-217ENST00000555953 SPATS2Q86XZ4 545 aaKnown RBP5.53□□□□□ -1.52
SCFD1-217ENST00000555953 WDR66Q8TBY9 1149 aa5.53□□□□□ -1.52
SCFD1-217ENST00000555953 NRG4Q8WWG1 115 aa5.53□□□□□ -1.52
SCFD1-217ENST00000555953 RAB24Q969Q5 203 aa5.53□□□□□ -1.52
SCFD1-217ENST00000555953 C7orf25Q9BPX7 421 aa5.53□□□□□ -1.52
SCFD1-217ENST00000555953 ARPP21Q9UBL0 812 aaPredicted RBP5.53□□□□□ -1.52
SCFD1-217ENST00000555953 A0A1W2PS29 197 aa5.52□□□□□ -1.53
SCFD1-217ENST00000555953 YY2O15391 372 aa5.52□□□□□ -1.53
SCFD1-217ENST00000555953 HAUS5O94927 633 aa5.52□□□□□ -1.53
SCFD1-217ENST00000555953 CTXN1P60606 82 aa5.52□□□□□ -1.53
SCFD1-217ENST00000555953 AKNAD1Q5T1N1 836 aa5.52□□□□□ -1.53
SCFD1-217ENST00000555953 VWA1Q6PCB0 445 aa5.52□□□□□ -1.53
SCFD1-217ENST00000555953 RHOT1Q8IXI2 618 aa5.52□□□□□ -1.53
SCFD1-217ENST00000555953 PPM1NQ8N819 430 aa5.52□□□□□ -1.53
SCFD1-217ENST00000555953 TMEM125Q96AQ2 219 aa5.52□□□□□ -1.53
SCFD1-217ENST00000555953 UROC1Q96N76 676 aa5.52□□□□□ -1.53
SCFD1-217ENST00000555953 INTUQ9ULD6 942 aa5.52□□□□□ -1.53
SCFD1-217ENST00000555953 K7ESF4 209 aa5.51□□□□□ -1.53
SCFD1-217ENST00000555953 SBK3P0C264 359 aa5.51□□□□□ -1.53
SCFD1-217ENST00000555953 SRGNP10124 158 aa5.51□□□□□ -1.53
SCFD1-217ENST00000555953 CPEP16870 476 aa5.51□□□□□ -1.53
SCFD1-217ENST00000555953 MAPK10P53779 464 aa5.51□□□□□ -1.53
SCFD1-217ENST00000555953 TARDBPQ13148 414 aaKnown RBP eCLIP5.51□□□□□ -1.53
SCFD1-217ENST00000555953 PEG10Q86TG7 708 aaKnown RBP5.51□□□□□ -1.53
SCFD1-217ENST00000555953 SH2D3CQ8N5H7 860 aa5.51□□□□□ -1.53
SCFD1-217ENST00000555953 NLGN4YQ8NFZ3 816 aaPredicted RBP5.51□□□□□ -1.53
SCFD1-217ENST00000555953 ANKS1AQ92625 1134 aa5.51□□□□□ -1.53
SCFD1-217ENST00000555953 WDR26Q9H7D7 661 aa5.51□□□□□ -1.53
SCFD1-217ENST00000555953 CDYLQ9Y232 598 aa5.51□□□□□ -1.53
SCFD1-217ENST00000555953 COL3A1P02461 1466 aaPredicted RBP5.51□□□□□ -1.53
SCFD1-217ENST00000555953 WASHC2AQ641Q2 1341 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 PRAMEF33A0A0G2JMD5 474 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 DNAJC9-AS1A6NH13 148 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 CGB1A6NKQ9 187 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 GRM6O15303 877 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 PROM1O43490 865 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 PRAMEF10O60809 474 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 AGFG2O95081 481 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 VIL1P09327 827 aaKnown RBP5.5□□□□□ -1.53
SCFD1-217ENST00000555953 KCNA2P16389 499 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 WASP42768 502 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 SDE2Q6IQ49 451 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 GIMAP6Q6P9H5 292 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 ZNF788Q6ZQV5 615 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 KRT26Q7Z3Y9 468 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 TFAP2BQ92481 460 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 LPIN2Q92539 896 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 TMX3Q96JJ7 454 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 FAM126AQ9BYI3 521 aaPredicted RBP5.5□□□□□ -1.53
SCFD1-217ENST00000555953 INTS13Q9NVM9 706 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 CTTNBP2NLQ9P2B4 639 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 ENTPD2Q9Y5L3 495 aa5.5□□□□□ -1.53
SCFD1-217ENST00000555953 MPPED1O15442 326 aa5.49□□□□□ -1.53
SCFD1-217ENST00000555953 ELFN1P0C7U0 828 aa5.49□□□□□ -1.53
SCFD1-217ENST00000555953 POU3F3P20264 500 aaPredicted RBP5.49□□□□□ -1.53
SCFD1-217ENST00000555953 GATA3P23771 443 aa5.49□□□□□ -1.53
SCFD1-217ENST00000555953 CNGA1P29973 690 aa5.49□□□□□ -1.53
SCFD1-217ENST00000555953 ABCG1P45844 678 aa5.49□□□□□ -1.53
SCFD1-217ENST00000555953 KLF1Q13351 362 aaPredicted RBP5.49□□□□□ -1.53
SCFD1-217ENST00000555953 ATP2B3Q16720 1220 aa5.49□□□□□ -1.53
SCFD1-217ENST00000555953 UTP14CQ5TAP6 766 aaKnown RBP5.49□□□□□ -1.53
SCFD1-217ENST00000555953 RNF219Q5W0B1 726 aaPredicted RBP5.49□□□□□ -1.53
SCFD1-217ENST00000555953 KAZNQ674X7 775 aa5.49□□□□□ -1.53
SCFD1-217ENST00000555953 TSHZ1Q6ZSZ6 1077 aa5.49□□□□□ -1.53
SCFD1-217ENST00000555953 GRASPQ7Z6J2 395 aaPredicted RBP5.49□□□□□ -1.53
SCFD1-217ENST00000555953 CLNKQ7Z7G1 428 aa5.49□□□□□ -1.53
SCFD1-217ENST00000555953 SLC30A5Q8TAD4 765 aa5.49□□□□□ -1.53
SCFD1-217ENST00000555953 IFI44Q8TCB0 444 aa5.49□□□□□ -1.53
SCFD1-217ENST00000555953 FBXL20Q96IG2 436 aa5.49□□□□□ -1.53
SCFD1-217ENST00000555953 TIMP4Q99727 224 aa5.49□□□□□ -1.53
SCFD1-217ENST00000555953 CPNE5Q9HCH3 593 aa5.49□□□□□ -1.53
SCFD1-217ENST00000555953 WIPF3A6NGB9 483 aa5.48□□□□□ -1.53
SCFD1-217ENST00000555953 TRIM75PA6NK02 468 aa5.48□□□□□ -1.53
SCFD1-217ENST00000555953 GRIA3P42263 894 aa5.48□□□□□ -1.53
SCFD1-217ENST00000555953 RPS7P62081 194 aaKnown RBP5.48□□□□□ -1.53
SCFD1-217ENST00000555953 FPGSQ05932 587 aa5.48□□□□□ -1.53
SCFD1-217ENST00000555953 CD300EQ496F6 205 aaPredicted RBP5.48□□□□□ -1.53
SCFD1-217ENST00000555953 FLYWCH1Q4VC44 716 aa5.48□□□□□ -1.53
SCFD1-217ENST00000555953 PABPC1LQ4VXU2 614 aaKnown RBP5.48□□□□□ -1.53
SCFD1-217ENST00000555953 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.48□□□□□ -1.53
SCFD1-217ENST00000555953 SARAFQ96BY9 339 aa5.48□□□□□ -1.53
SCFD1-217ENST00000555953 KLHL32Q96NJ5 620 aa5.48□□□□□ -1.53
SCFD1-217ENST00000555953 TDP1Q9NUW8 608 aa5.48□□□□□ -1.53
SCFD1-217ENST00000555953 RNF7Q9UBF6 113 aa5.48□□□□□ -1.53
SCFD1-217ENST00000555953 TUBD1Q9UJT1 453 aa5.48□□□□□ -1.53
SCFD1-217ENST00000555953 TMA7Q9Y2S6 64 aaKnown RBP5.48□□□□□ -1.53
SCFD1-217ENST00000555953 PCDHA13Q9Y5I0 950 aa5.48□□□□□ -1.53
SCFD1-217ENST00000555953 CCDC151A5D8V7 595 aa5.47□□□□□ -1.53
SCFD1-217ENST00000555953 ADM5C9JUS6 153 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms