RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 CLSTN3Q9BQT9 956 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 ASB7Q9H672 318 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 SLC39A2Q9NP94 309 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 EXOC1Q9NV70 894 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 RBAKQ9NYW8 714 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-219ENST00000555563 MTRRQ9UBK8 725 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 DERAQ9Y315 318 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 C2CD2Q9Y426 696 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 DENND4AQ7Z401 1863 aa14.89□□□□□ -0.03
SHMT2-219ENST00000555563 TSC2P49815 1807 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 C19orf67A6NJJ6 358 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 PPEF2O14830 753 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 SYN3O14994 580 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 EXTL3O43909 919 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 IL18RAPO95256 599 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 MYL1P05976 194 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 SPATA31D3P0C874 917 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 BMT2Q1RMZ1 405 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 KMT5BQ4FZB7 885 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 VARS2Q5ST30 1063 aaKnown RBP14.88□□□□□ -0.03
SHMT2-219ENST00000555563 CES5AQ6NT32 575 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 TMC5Q6UXY8 1006 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 KRBA2Q6ZNG9 492 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 SPATA31D4Q6ZUB0 917 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 ANKS3Q6ZW76 656 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 KIAA0895Q8NCT3 520 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 ZNF507Q8TCN5 953 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 NOC3LQ8WTT2 800 aaKnown RBP14.88□□□□□ -0.03
SHMT2-219ENST00000555563 SUSD3Q96L08 255 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 LRFN3Q9BTN0 628 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 PHF7Q9BWX1 381 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-219ENST00000555563 PCIF1Q9H4Z3 704 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 POMKQ9H5K3 350 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 AGPAT3Q9NRZ7 376 aa14.88□□□□□ -0.03
SHMT2-219ENST00000555563 CIZ1Q9ULV3 898 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-219ENST00000555563 ARIH1Q9Y4X5 557 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-219ENST00000555563 C2orf16Q68DN1 1984 aa14.87□□□□□ -0.03
SHMT2-219ENST00000555563 TGFB1I1O43294 461 aa14.87□□□□□ -0.03
SHMT2-219ENST00000555563 ZNF202O95125 648 aa14.87□□□□□ -0.03
SHMT2-219ENST00000555563 LDHAP00338 332 aaKnown RBP14.87□□□□□ -0.03
SHMT2-219ENST00000555563 C1RP00736 705 aa14.87□□□□□ -0.03
SHMT2-219ENST00000555563 AARSP49588 968 aaKnown RBP eCLIP14.87□□□□□ -0.03
SHMT2-219ENST00000555563 TMEM31Q5JXX7 168 aa14.87□□□□□ -0.03
SHMT2-219ENST00000555563 C9orf57Q5W0N0 161 aa14.87□□□□□ -0.03
SHMT2-219ENST00000555563 LILRA6Q6PI73 481 aa14.87□□□□□ -0.03
SHMT2-219ENST00000555563 ELMSAN1Q6PJG2 1045 aa14.87□□□□□ -0.03
SHMT2-219ENST00000555563 RSPO2Q6UXX9 243 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-219ENST00000555563 GPD1LQ8N335 351 aa14.87□□□□□ -0.03
SHMT2-219ENST00000555563 KHSRPQ92945 711 aaKnown RBP eCLIP14.87□□□□□ -0.03
SHMT2-219ENST00000555563 HSPBP1Q9NZL4 362 aa14.87□□□□□ -0.03
SHMT2-219ENST00000555563 FBXW11Q9UKB1 542 aa14.87□□□□□ -0.03
SHMT2-219ENST00000555563 PCDHB8Q9UN66 801 aa14.87□□□□□ -0.03
SHMT2-219ENST00000555563 HCN4Q9Y3Q4 1203 aa14.87□□□□□ -0.03
SHMT2-219ENST00000555563 BACE2Q9Y5Z0 518 aa14.87□□□□□ -0.03
SHMT2-219ENST00000555563 CDY1Q9Y6F8 540 aa14.87□□□□□ -0.03
SHMT2-219ENST00000555563 LOC730098B7Z3J9 87 aa14.86□□□□□ -0.03
SHMT2-219ENST00000555563 TULP1O00294 542 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-219ENST00000555563 KIAA0391O15091 583 aaKnown RBP14.86□□□□□ -0.03
SHMT2-219ENST00000555563 RFPL2O75678 378 aa14.86□□□□□ -0.03
SHMT2-219ENST00000555563 RPN1P04843 607 aaKnown RBP14.86□□□□□ -0.03
SHMT2-219ENST00000555563 SP100P23497 879 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-219ENST00000555563 OR1D2P34982 312 aa14.86□□□□□ -0.03
SHMT2-219ENST00000555563 MTHFRP42898 656 aa14.86□□□□□ -0.03
SHMT2-219ENST00000555563 DPYDQ12882 1025 aa14.86□□□□□ -0.03
SHMT2-219ENST00000555563 STK4Q13043 487 aa14.86□□□□□ -0.03
SHMT2-219ENST00000555563 GPR149Q86SP6 731 aa14.86□□□□□ -0.03
SHMT2-219ENST00000555563 CBWD2Q8IUF1 395 aa14.86□□□□□ -0.03
SHMT2-219ENST00000555563 KREMEN2Q8NCW0 462 aa14.86□□□□□ -0.03
SHMT2-219ENST00000555563 CMASQ8NFW8 434 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-219ENST00000555563 HDAC7Q8WUI4 952 aa14.86□□□□□ -0.03
SHMT2-219ENST00000555563 FAM84AQ96KN4 292 aa14.86□□□□□ -0.03
SHMT2-219ENST00000555563 RPGRIP1Q96KN7 1286 aa14.86□□□□□ -0.03
SHMT2-219ENST00000555563 RIPOR3Q96MK2 946 aa14.86□□□□□ -0.03
SHMT2-219ENST00000555563 NECTIN4Q96NY8 510 aa14.86□□□□□ -0.03
SHMT2-219ENST00000555563 PLEKHA4Q9H4M7 779 aa14.86□□□□□ -0.03
SHMT2-219ENST00000555563 DPP7Q9UHL4 492 aa14.86□□□□□ -0.03
SHMT2-219ENST00000555563 MTCL1Q9Y4B5 1905 aaKnown RBP14.86□□□□□ -0.03
SHMT2-219ENST00000555563 ANO9A1A5B4 782 aa14.85□□□□□ -0.03
SHMT2-219ENST00000555563 GOLGA6L4A6NEF3 574 aa14.85□□□□□ -0.03
SHMT2-219ENST00000555563 M0QZQ0 153 aa14.85□□□□□ -0.03
SHMT2-219ENST00000555563 PIRO00625 290 aa14.85□□□□□ -0.03
SHMT2-219ENST00000555563 SPTLC1O15269 473 aa14.85□□□□□ -0.03
SHMT2-219ENST00000555563 HOXD11P31277 338 aaPredicted RBP14.85□□□□□ -0.03
SHMT2-219ENST00000555563 ANP32AP39687 249 aaKnown RBP14.85□□□□□ -0.03
SHMT2-219ENST00000555563 CYP2J2P51589 502 aa14.85□□□□□ -0.03
SHMT2-219ENST00000555563 TFAMQ00059 246 aaKnown RBP14.85□□□□□ -0.03
SHMT2-219ENST00000555563 RAB33AQ14088 237 aa14.85□□□□□ -0.03
SHMT2-219ENST00000555563 KNOP1Q1ED39 458 aaKnown RBP14.85□□□□□ -0.03
SHMT2-219ENST00000555563 ATAT1Q5SQI0 421 aa14.85□□□□□ -0.03
SHMT2-219ENST00000555563 C15orf39Q6ZRI6 1047 aa14.85□□□□□ -0.03
SHMT2-219ENST00000555563 HS2ST1Q7LGA3 356 aa14.85□□□□□ -0.03
SHMT2-219ENST00000555563 NT5DC4Q86YG4 428 aa14.85□□□□□ -0.03
SHMT2-219ENST00000555563 FMR1NBQ8N0W7 255 aaPredicted RBP14.85□□□□□ -0.03
SHMT2-219ENST00000555563 APPL2Q8NEU8 664 aa14.85□□□□□ -0.03
SHMT2-219ENST00000555563 PDE11AQ9HCR9 933 aa14.85□□□□□ -0.03
SHMT2-219ENST00000555563 ZDHHC7Q9NXF8 308 aa14.85□□□□□ -0.03
SHMT2-219ENST00000555563 DPP3Q9NY33 737 aa14.85□□□□□ -0.03
SHMT2-219ENST00000555563 NCOR1O75376 2440 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 SCN1AP35498 2009 aa14.84□□□□□ -0.03
SHMT2-219ENST00000555563 CCDC195A0A1B0GUA6 201 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms