RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 STK4Q13043 487 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 ALCAMQ13740 583 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 TMEM132DQ14C87 1099 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 POSTNQ15063 836 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 KMT5BQ4FZB7 885 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 VARS2Q5ST30 1063 aaKnown RBP12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 C9orf57Q5W0N0 161 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 LMBRD2Q68DH5 695 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 ARMCX5Q6P1M9 558 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 CBWD2Q8IUF1 395 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 KREMEN2Q8NCW0 462 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 SUSD3Q96L08 255 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 PHF7Q9BWX1 381 aaPredicted RBP12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 PDE11AQ9HCR9 933 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 TSHZ2Q9NRE2 1034 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 MTRRQ9UBK8 725 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 PRKAG3Q9UGI9 489 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 CDY1Q9Y6F8 540 aa12.57□□□□□ -0.4
CCDC88C-208ENST00000554165 SCN1AP35498 2009 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 CCDC195A0A1B0GUA6 201 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 PVALEFA0A1B0GWK0 134 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 LOC730098B7Z3J9 87 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 CLIC2O15247 247 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 EIF3DO15371 548 aaKnown RBP eCLIP12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 TRAPPC3O43617 180 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 ZNF202O95125 648 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 CYP3A5P20815 502 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 ARPP19P56211 112 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 ITIH3Q06033 890 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 CES5AQ6NT32 575 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 KRBA2Q6ZNG9 492 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 GPR149Q86SP6 731 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 BRSK2Q8IWQ3 736 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 GPR65Q8IYL9 337 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 KIAA0895Q8NCT3 520 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 BEST2Q8NFU1 509 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 ZNF707Q96C28 371 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 TMEM206Q9H813 350 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 SFXN1Q9H9B4 322 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 AGPAT3Q9NRZ7 376 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 RBAKQ9NYW8 714 aaPredicted RBP12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 PTPRJQ12913 1337 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 C2orf16Q68DN1 1984 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 TRIOO75962 3097 aa12.56□□□□□ -0.4
CCDC88C-208ENST00000554165 ANO9A1A5B4 782 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 EXTL3O43909 919 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 TBC1D4O60343 1298 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 CYP2J2P51589 502 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 TFAMQ00059 246 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 DPYDQ12882 1025 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 RAB33AQ14088 237 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 MRPL58Q14197 206 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 ANKS3Q6ZW76 656 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 STXBP4Q6ZWJ1 553 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 RNF135Q8IUD6 432 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 CD302Q8IX05 232 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 RDH13Q8NBN7 331 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 ERCC4Q92889 916 aaPredicted RBP12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 PYM1Q9BRP8 204 aaKnown RBP12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 ASB7Q9H672 318 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 EXOC1Q9NV70 894 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 DPP3Q9NY33 737 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 HSPBP1Q9NZL4 362 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 USP25Q9UHP3 1055 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 MUTYHQ9UIF7 546 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 FBXL5Q9UKA1 691 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 FBXW11Q9UKB1 542 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 PCDHB8Q9UN66 801 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 BACE2Q9Y5Z0 518 aa12.55□□□□□ -0.4
CCDC88C-208ENST00000554165 MYO10Q9HD67 2058 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 FAM86C2PA6NEL3 165 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 C2CD4DB7Z1M9 353 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 M0QZQ0 153 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 PIRO00625 290 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 ZMYND10O75800 440 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 IL18RAPO95256 599 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 RPN1P04843 607 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 OR4Q2P0C623 313 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 MTHFRP42898 656 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 AARSP49588 968 aaKnown RBP eCLIP12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 LILRA4P59901 499 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 NTHL1P78549 312 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 CREMQ03060 361 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 CTXN3Q4LDR2 81 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 ATAT1Q5SQI0 421 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 DSTYKQ6XUX3 929 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 FMR1NBQ8N0W7 255 aaPredicted RBP12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 GPD1LQ8N335 351 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 C1orf127Q8N9H9 656 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 OR5B17Q8NGF7 314 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 SMG7Q92540 1137 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 SENP8Q96LD8 212 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 RIPOR3Q96MK2 946 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 MAPK8IP1Q9UQF2 711 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 DERAQ9Y315 318 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 C2CD2Q9Y426 696 aa12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 MTCL1Q9Y4B5 1905 aaKnown RBP12.54□□□□□ -0.4
CCDC88C-208ENST00000554165 WDR27A2RRH5 827 aa12.53□□□□□ -0.4
CCDC88C-208ENST00000554165 PI4K2BG5E9Z4 385 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms