RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 RGS9BPQ6ZS82 235 aa18.62■□□□□ 0.57
SYNE3-202ENST00000553340 SV2AQ7L0J3 742 aa18.62■□□□□ 0.57
SYNE3-202ENST00000553340 ELMO3Q96BJ8 720 aa18.62■□□□□ 0.57
SYNE3-202ENST00000553340 TMEM237Q96Q45 408 aa18.62■□□□□ 0.57
SYNE3-202ENST00000553340 RNPEPL1Q9HAU8 725 aa18.62■□□□□ 0.57
SYNE3-202ENST00000553340 CLGNO14967 610 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 DHX15O43143 795 aaKnown RBP18.61■□□□□ 0.57
SYNE3-202ENST00000553340 LYPLA2O95372 231 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 TARSP26639 723 aaKnown RBP18.61■□□□□ 0.57
SYNE3-202ENST00000553340 KLRC2P26717 231 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 CDC25CP30307 473 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 ALDH1B1P30837 517 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 LMNB2Q03252 620 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 MOGSQ13724 837 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 BLMHQ13867 455 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 DACT2Q5SW24 774 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 LDHDQ86WU2 507 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.61■□□□□ 0.57
SYNE3-202ENST00000553340 KCNV2Q8TDN2 545 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 DENND1AQ8TEH3 1009 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 NAF1Q96HR8 494 aaKnown RBP18.61■□□□□ 0.57
SYNE3-202ENST00000553340 TTC25Q96NG3 672 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 TRABDQ9H4I3 376 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 SLC24A3Q9HC58 644 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 SAYSD1Q9NPB0 183 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 HAO1Q9UJM8 370 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 CORO1CQ9ULV4 474 aaPredicted RBP18.61■□□□□ 0.57
SYNE3-202ENST00000553340 SMG5Q9UPR3 1016 aaKnown RBP18.61■□□□□ 0.57
SYNE3-202ENST00000553340 FDX1P10109 184 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 CALB2P22676 271 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 FAM102BQ5T8I3 360 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 DAB2IPQ5VWQ8 1189 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 ZNF677Q86XU0 584 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 TDRPQ86YL5 185 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 SMC6Q96SB8 1091 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.61■□□□□ 0.57
SYNE3-202ENST00000553340 SENP1Q9P0U3 644 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 MYPNQ86TC9 1320 aa18.61■□□□□ 0.57
SYNE3-202ENST00000553340 E7ENQ6 273 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 KRT15P19012 456 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 GCKP35557 465 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 RASSF2P50749 326 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 PDK4Q16654 411 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 PAXIP1Q6ZW49 1069 aaPredicted RBP18.6■□□□□ 0.57
SYNE3-202ENST00000553340 KATNAL2Q8IYT4 538 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 LARGE2Q8N3Y3 721 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 LRRC8CQ8TDW0 803 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 MFSD14AQ96MC6 490 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 KIAA1586Q9HCI6 787 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 PCDHB2Q9Y5E7 798 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 SLX4Q8IY92 1834 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 TMEM150BA6NC51 233 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 POC1B-GALNT4F8VUJ3 575 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 PPP1R12AO14974 1030 aaPredicted RBP18.6■□□□□ 0.57
SYNE3-202ENST00000553340 AOC3Q16853 763 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 MIS18BP1Q6P0N0 1132 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 LLGL2Q6P1M3 1020 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 ANKS1BQ7Z6G8 1248 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 MAP4K3Q8IVH8 894 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 SPOCK2Q92563 424 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 PI4K2AQ9BTU6 479 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 SLCO1B3Q9NPD5 702 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 C1orf112Q9NSG2 853 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 NKX1-2Q9UD57 310 aaPredicted RBP18.6■□□□□ 0.57
SYNE3-202ENST00000553340 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.6■□□□□ 0.57
SYNE3-202ENST00000553340 UMODL1Q5DID0 1318 aa18.6■□□□□ 0.57
SYNE3-202ENST00000553340 EDF1O60869 148 aaKnown RBP18.59■□□□□ 0.57
SYNE3-202ENST00000553340 ZC3H11AO75152 810 aaKnown RBP eCLIP18.59■□□□□ 0.57
SYNE3-202ENST00000553340 GNAZP19086 355 aa18.59■□□□□ 0.57
SYNE3-202ENST00000553340 GCAP28676 217 aa18.59■□□□□ 0.57
SYNE3-202ENST00000553340 C2CD6Q53TS8 623 aa18.59■□□□□ 0.57
SYNE3-202ENST00000553340 LIN9Q5TKA1 542 aa18.59■□□□□ 0.57
SYNE3-202ENST00000553340 NIPA1Q7RTP0 329 aa18.59■□□□□ 0.57
SYNE3-202ENST00000553340 TRMT1LQ7Z2T5 733 aaKnown RBP18.59■□□□□ 0.57
SYNE3-202ENST00000553340 TMEM161BQ8NDZ6 487 aa18.59■□□□□ 0.57
SYNE3-202ENST00000553340 EXD1Q8NHP7 514 aa18.59■□□□□ 0.57
SYNE3-202ENST00000553340 KIAA1683Q9H0B3 1180 aa18.59■□□□□ 0.57
SYNE3-202ENST00000553340 CYP39A1Q9NYL5 469 aa18.59■□□□□ 0.57
SYNE3-202ENST00000553340 HERC5Q9UII4 1024 aaKnown RBP18.59■□□□□ 0.57
SYNE3-202ENST00000553340 CETN2P41208 172 aa18.59■□□□□ 0.57
SYNE3-202ENST00000553340 SSR1P43307 286 aaKnown RBP18.59■□□□□ 0.57
SYNE3-202ENST00000553340 TAS2R40P59535 323 aa18.59■□□□□ 0.57
SYNE3-202ENST00000553340 BPIFB4P59827 614 aa18.59■□□□□ 0.57
SYNE3-202ENST00000553340 IRX1P78414 480 aaPredicted RBP18.59■□□□□ 0.57
SYNE3-202ENST00000553340 CYP24A1Q07973 514 aa18.59■□□□□ 0.57
SYNE3-202ENST00000553340 PCNX4Q63HM2 1172 aa18.59■□□□□ 0.57
SYNE3-202ENST00000553340 TEX9Q8N6V9 391 aa18.59■□□□□ 0.57
SYNE3-202ENST00000553340 FAM13CQ8NE31 585 aa18.59■□□□□ 0.57
SYNE3-202ENST00000553340 STK32AQ8WU08 396 aa18.59■□□□□ 0.57
SYNE3-202ENST00000553340 FBXL18Q96ME1 805 aa18.59■□□□□ 0.57
SYNE3-202ENST00000553340 AGO4Q9HCK5 861 aaKnown RBP18.59■□□□□ 0.57
SYNE3-202ENST00000553340 PEX11AO75192 247 aa18.58■□□□□ 0.57
SYNE3-202ENST00000553340 PKN2Q16513 984 aaKnown RBP18.58■□□□□ 0.57
SYNE3-202ENST00000553340 FAM160B2Q86V87 743 aa18.58■□□□□ 0.57
SYNE3-202ENST00000553340 OGFOD1Q8N543 542 aa18.58■□□□□ 0.57
SYNE3-202ENST00000553340 POMGNT1Q8WZA1 660 aa18.58■□□□□ 0.57
SYNE3-202ENST00000553340 MRPL47Q9HD33 250 aaKnown RBP18.58■□□□□ 0.57
SYNE3-202ENST00000553340 LRRC42Q9Y546 428 aa18.58■□□□□ 0.57
SYNE3-202ENST00000553340 DENND3A2RUS2 1198 aa18.58■□□□□ 0.56
SYNE3-202ENST00000553340 DNALI1O14645 258 aaPredicted RBP18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms