RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TMOD1P28289 359 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 DNM2P50570 870 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 RABGGTBP53611 331 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 DEFB103AP81534 67 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 MRPS6P82932 125 aaKnown RBP8.21□□□□□ -1.1
LIMA1-216ENST00000552909 MKRN4PQ13434 485 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-216ENST00000552909 SNX1Q13596 522 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 LPIN1Q14693 890 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 PLEKHG4Q58EX7 1191 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 ZC3H12AQ5D1E8 599 aaKnown RBP8.21□□□□□ -1.1
LIMA1-216ENST00000552909 EFCAB12Q6NXP0 572 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.21□□□□□ -1.1
LIMA1-216ENST00000552909 TPH2Q8IWU9 490 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 ANKS4BQ8N8V4 417 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 CCDC197Q8NCU1 140 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 ZNF507Q8TCN5 953 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 TMEM40Q8WWA1 233 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.21□□□□□ -1.12e-6■■■■■ 29
LIMA1-216ENST00000552909 FAM167AQ96KS9 214 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 FAM161BQ96MY7 647 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 NIFKQ9BYG3 293 aaKnown RBP8.21□□□□□ -1.1
LIMA1-216ENST00000552909 IFIH1Q9BYX4 1025 aaKnown RBP8.21□□□□□ -1.1
LIMA1-216ENST00000552909 RMND1Q9NWS8 449 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.21□□□□□ -1.1
LIMA1-216ENST00000552909 RNF14Q9UBS8 474 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 L3MBTL1Q9Y468 752 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 SLC4A7Q9Y6M7 1214 aa8.21□□□□□ -1.1
LIMA1-216ENST00000552909 COL1A2P08123 1366 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-216ENST00000552909 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-216ENST00000552909 ZSCAN5CA6NGD5 496 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-216ENST00000552909 DIAPH2O60879 1101 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 SPATA31C1P0DKV0 1188 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 CDK17Q00537 523 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 BLMHQ13867 455 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 KIZQ2M2Z5 673 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 NAALADL2Q58DX5 795 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 FBXO47Q5MNV8 452 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 ZNF658Q5TYW1 1059 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-216ENST00000552909 CNKSR3Q6P9H4 555 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 RSPH3Q86UC2 560 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 MFN1Q8IWA4 741 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 C4orf19Q8IY42 314 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 LINC01465Q8N7H1 131 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 SNX29Q8TEQ0 813 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 CASKIN2Q8WXE0 1202 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 CDK5RAP3Q96JB5 506 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 MTRQ99707 1265 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 PBX4Q9BYU1 374 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 TTYH3Q9C0H2 523 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 BLZF1Q9H2G9 400 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 NDST4Q9H3R1 872 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 BMP2KQ9NSY1 1161 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-216ENST00000552909 AGPAT5Q9NUQ2 364 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 MAGEC2Q9UBF1 373 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-216ENST00000552909 SLC12A4Q9UP95 1085 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 PCDHA13Q9Y5I0 950 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 NCK2O43639 380 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 GPR32O75388 356 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 MED24O75448 989 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 RTN3O95197 1032 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-216ENST00000552909 PARNO95453 639 aaKnown RBP8.2□□□□□ -1.1
LIMA1-216ENST00000552909 ACTN1P12814 892 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 FERP16591 822 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 ATP2A2P16615 1042 aaKnown RBP8.2□□□□□ -1.1
LIMA1-216ENST00000552909 DRD4P21917 467 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 DNAJB2P25686 324 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 CDC25CP30307 473 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 CD52P31358 61 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 YWHABP31946 246 aaKnown RBP8.2□□□□□ -1.1
LIMA1-216ENST00000552909 WDR5P61964 334 aaKnown RBP8.2□□□□□ -1.1
LIMA1-216ENST00000552909 SMAD3P84022 425 aaKnown RBP8.2□□□□□ -1.1
LIMA1-216ENST00000552909 GRB10Q13322 594 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 ECM1Q16610 540 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 AGBL2Q5U5Z8 902 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 IER5Q5VY09 327 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 CWF19L1Q69YN2 538 aaKnown RBP8.2□□□□□ -1.1
LIMA1-216ENST00000552909 TBC1D1Q86TI0 1168 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-216ENST00000552909 CATSPER3Q86XQ3 398 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 DRAXINQ8NBI3 349 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-216ENST00000552909 PIGOQ8TEQ8 1089 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 AGAP11Q8TF27 550 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 LRRC15Q8TF66 581 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 CHMP6Q96FZ7 201 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 BORCS6Q96GS4 357 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 PCMTD1Q96MG8 357 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-216ENST00000552909 PNMA5Q96PV4 448 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 CELF4Q9BZC1 486 aaKnown RBP8.2□□□□□ -1.1
LIMA1-216ENST00000552909 TTYH1Q9H313 450 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-216ENST00000552909 CYP26B1Q9NR63 512 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 EXOC1Q9NV70 894 aa8.2□□□□□ -1.1
LIMA1-216ENST00000552909 MICAL3Q7RTP6 2002 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 IGKV6-21A0A0C4DH24 114 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.19□□□□□ -1.1
LIMA1-216ENST00000552909 A6NHS1 94 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 TTC36A6NLP5 189 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 ZNF263O14978 683 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 MAGEB2O15479 319 aa8.19□□□□□ -1.1
LIMA1-216ENST00000552909 GTPBP6O43824 516 aaPredicted RBP8.19□□□□□ -1.1
LIMA1-216ENST00000552909 CSDE1O75534 798 aaKnown RBP8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms