RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 NF2P35240 595 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 PSMC4P43686 418 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 SLC5A3P53794 718 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 AK2P54819 239 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 SMAD3P84022 425 aaKnown RBP4.52□□□□□ -1.69
LIMA1-208ENST00000551691 SRSF2Q01130 221 aaKnown RBP4.52□□□□□ -1.69
LIMA1-208ENST00000551691 PLP2Q04941 152 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 CHAF1AQ13111 956 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-208ENST00000551691 STK3Q13188 491 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 SLC9A5Q14940 896 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 RTP5Q14D33 572 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 ARHGEF6Q15052 776 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 SMAD2Q15796 467 aaKnown RBP4.52□□□□□ -1.69
LIMA1-208ENST00000551691 UGT8Q16880 541 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 TOR2AQ5JU69 321 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 CPZQ66K79 652 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 MBLAC2Q68D91 279 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 OTUD7BQ6GQQ9 843 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 TMED8Q6PL24 325 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-208ENST00000551691 HHIPL2Q6UWX4 724 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 DBX2Q6ZNG2 339 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 ESPNLQ6ZVH7 1005 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 FAM186BQ8IYM0 893 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 ANKRD42Q8N9B4 389 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 RAET1EQ8TD07 263 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 PARD3BQ8TEW8 1205 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 LMBR1Q8WVP7 490 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 ERCC4Q92889 916 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-208ENST00000551691 FAM193BQ96PV7 902 aaPredicted RBP4.52□□□□□ -1.69
LIMA1-208ENST00000551691 ASB2Q96Q27 587 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 STRBPQ96SI9 672 aaKnown RBP4.52□□□□□ -1.69
LIMA1-208ENST00000551691 MYD88Q99836 296 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 NYXQ9GZU5 481 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 SMURF1Q9HCE7 757 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 PLCB1Q9NQ66 1216 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 RIC8BQ9NVN3 520 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 SRRDQ9UH36 339 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 DDX20Q9UHI6 824 aaKnown RBP4.52□□□□□ -1.69
LIMA1-208ENST00000551691 CPA4Q9UI42 421 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 ACSL6Q9UKU0 697 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 EDARQ9UNE0 448 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 DMTF1Q9Y222 760 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 PCDHAC2Q9Y5I4 1007 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 GPR45Q9Y5Y3 372 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 RIC1Q4ADV7 1423 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 NCOR1O75376 2440 aa4.52□□□□□ -1.69
LIMA1-208ENST00000551691 SCN9AQ15858 1988 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 A0A1W2PQ45 241 aaPredicted RBP4.51□□□□□ -1.69
LIMA1-208ENST00000551691 A0A1W2PQY0 241 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 PLA2G1BP04054 148 aaKnown RBP4.51□□□□□ -1.69
LIMA1-208ENST00000551691 ZBTB48P10074 688 aaPredicted RBP4.51□□□□□ -1.69
LIMA1-208ENST00000551691 MYBP10242 640 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 OSMP13725 252 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 ENPP1P22413 925 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 PTX3P26022 381 aaPredicted RBP4.51□□□□□ -1.69
LIMA1-208ENST00000551691 GJA4P35212 333 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 IL13P35225 146 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 MC3RP41968 323 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 GPR3P46089 330 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 SLURP1P55000 103 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 ADKP55263 362 aaKnown RBP4.51□□□□□ -1.69
LIMA1-208ENST00000551691 PRKCZQ05513 592 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 POU5F1BQ06416 359 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 IFIT5Q13325 482 aaKnown RBP4.51□□□□□ -1.69
LIMA1-208ENST00000551691 ZNF267Q14586 743 aaPredicted RBP4.51□□□□□ -1.69
LIMA1-208ENST00000551691 LONRF1Q17RB8 773 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.51□□□□□ -1.69
LIMA1-208ENST00000551691 SLC10A5Q5PT55 438 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 ZFYVE27Q5T4F4 411 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 MROH9Q5TGP6 573 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 CCDC62Q6P9F0 684 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 ZC3H14Q6PJT7 736 aaKnown RBP4.51□□□□□ -1.69
LIMA1-208ENST00000551691 OTOP3Q7RTS5 596 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 SRLQ86TD4 932 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 CMIPQ8IY22 773 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 SMAP1Q8IYB5 467 aaPredicted RBP4.51□□□□□ -1.69
LIMA1-208ENST00000551691 ZNF34Q8IZ26 560 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 CPXCR1Q8N123 301 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 PPM1NQ8N819 430 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 SLC35G2Q8TBE7 412 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 TBC1D16Q8TBP0 767 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 PIP4K2CQ8TBX8 421 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 RTF1Q92541 710 aaKnown RBP4.51□□□□□ -1.69
LIMA1-208ENST00000551691 CELF1Q92879 486 aaKnown RBP4.51□□□□□ -1.69
LIMA1-208ENST00000551691 OPTNQ96CV9 577 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 TEPSINQ96N21 525 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 SPATA25Q9BR10 227 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 C1QTNF1Q9BXJ1 281 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 KCNH7Q9NS40 1196 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 FBXL7Q9UJT9 491 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 SRPK3Q9UPE1 567 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 RRP7AQ9Y3A4 280 aaKnown RBP4.51□□□□□ -1.69
LIMA1-208ENST00000551691 ZFHX4Q86UP3 3567 aa4.51□□□□□ -1.69
LIMA1-208ENST00000551691 AOX1Q06278 1338 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 C5orf42Q9H799 3197 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 DUOX1Q9NRD9 1551 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 CCL15-CCL14A0A0B4J2E2 113 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 F5H423 210 aaPredicted RBP4.5□□□□□ -1.69
LIMA1-208ENST00000551691 FAM227AF5H4B4 570 aa4.5□□□□□ -1.69
LIMA1-208ENST00000551691 ARNTLO00327 626 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms