RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 CAVIN1Q6NZI2 390 aaKnown RBP17.54■□□□□ 0.4
CHMP1A-209ENST00000550872 RBM43Q6ZSC3 357 aaKnown RBP17.54■□□□□ 0.4
CHMP1A-209ENST00000550872 CEP57Q86XR8 500 aa17.54■□□□□ 0.4
CHMP1A-209ENST00000550872 RNF168Q8IYW5 571 aaPredicted RBP17.54■□□□□ 0.4
CHMP1A-209ENST00000550872 OR5B17Q8NGF7 314 aa17.54■□□□□ 0.4
CHMP1A-209ENST00000550872 PLEKHO2Q8TD55 490 aa17.54■□□□□ 0.4
CHMP1A-209ENST00000550872 PARD3BQ8TEW8 1205 aa17.54■□□□□ 0.4
CHMP1A-209ENST00000550872 AUTS2Q8WXX7 1259 aa17.54■□□□□ 0.4
CHMP1A-209ENST00000550872 PPP2R3CQ969Q6 453 aa17.54■□□□□ 0.4
CHMP1A-209ENST00000550872 SYAP1Q96A49 352 aaPredicted RBP17.54■□□□□ 0.4
CHMP1A-209ENST00000550872 MTMR12Q9C0I1 747 aa17.54■□□□□ 0.4
CHMP1A-209ENST00000550872 TMEM63CQ9P1W3 806 aa17.54■□□□□ 0.4
CHMP1A-209ENST00000550872 PTPRJQ12913 1337 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 CHD9Q3L8U1 2897 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 TTC28Q96AY4 2481 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 ANO9A1A5B4 782 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 I3L4J1 428 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 PIRO00625 290 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 C2CD2LO14523 706 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 URODP06132 367 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 EPB41P11171 864 aaKnown RBP17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 KRT13P13646 458 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 GLUD2P49448 558 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 TCEAL5Q5H9L2 206 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 TTI2Q6NXR4 508 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 SASS6Q6UVJ0 657 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 INTS8Q75QN2 995 aaKnown RBP17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 CSGALNACT2Q8N6G5 542 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 MRPL43Q8N983 215 aaKnown RBP17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 C1orf127Q8N9H9 656 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 TMC2Q8TDI7 906 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 B3GALT6Q96L58 329 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 DUSP9Q99956 384 aaKnown RBP17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 MKNK1Q9BUB5 465 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 MRPL17Q9NRX2 175 aaKnown RBP17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 AGAP1Q9UPQ3 857 aa17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 R3HCC1Q9Y3T6 440 aaKnown RBP17.53■□□□□ 0.4
CHMP1A-209ENST00000550872 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 C2orf71A6NGG8 1288 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 LRRIQ3A6PVS8 624 aaPredicted RBP17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 HIDE1A8MVS5 230 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 ITGB3P05106 788 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 KRT19P08727 400 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 POLR2BP30876 1174 aaKnown RBP17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 VAMP7P51809 220 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 RBP5P82980 135 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 DSG1Q02413 1049 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 KLHL40Q2TBA0 621 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 DPCR1Q3MIW9 517 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 FOXR2Q6PJQ5 311 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 TRAPPC11Q7Z392 1133 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 ADGRD2Q7Z7M1 963 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 USP37Q86T82 979 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 RBM23Q86U06 439 aaKnown RBP17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 ZC3H3Q8IXZ2 948 aaKnown RBP17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 RIN2Q8WYP3 895 aaPredicted RBP17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 ZNF516Q92618 1163 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 TTPALQ9BTX7 342 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 GZF1Q9H116 711 aaPredicted RBP17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 TLE6Q9H808 572 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 CHST7Q9NS84 486 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 DACH1Q9UI36 760 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 RWDD2AQ9UIY3 292 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 ITGA11Q9UKX5 1188 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 SSX2IPQ9Y2D8 614 aa17.52■□□□□ 0.4
CHMP1A-209ENST00000550872 SLC16A3O15427 465 aaKnown RBP17.51■□□□□ 0.39
CHMP1A-209ENST00000550872 FGFR3P22607 806 aa17.51■□□□□ 0.39
CHMP1A-209ENST00000550872 PAX3P23760 479 aa17.51■□□□□ 0.39
CHMP1A-209ENST00000550872 TAF6P49848 677 aa17.51■□□□□ 0.39
CHMP1A-209ENST00000550872 AP3M2P53677 418 aa17.51■□□□□ 0.39
CHMP1A-209ENST00000550872 LILRA4P59901 499 aa17.51■□□□□ 0.39
CHMP1A-209ENST00000550872 DLG4P78352 724 aa17.51■□□□□ 0.39
CHMP1A-209ENST00000550872 PTPN14Q15678 1187 aa17.51■□□□□ 0.39
CHMP1A-209ENST00000550872 KIAA0319Q5VV43 1072 aa17.51■□□□□ 0.39
CHMP1A-209ENST00000550872 DSTYKQ6XUX3 929 aa17.51■□□□□ 0.39
CHMP1A-209ENST00000550872 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.51■□□□□ 0.39
CHMP1A-209ENST00000550872 FILIP1Q7Z7B0 1213 aa17.51■□□□□ 0.39
CHMP1A-209ENST00000550872 SUSD3Q96L08 255 aa17.51■□□□□ 0.39
CHMP1A-209ENST00000550872 CEP63Q96MT8 703 aa17.51■□□□□ 0.39
CHMP1A-209ENST00000550872 IGFLR1Q9H665 355 aa17.51■□□□□ 0.39
CHMP1A-209ENST00000550872 IRAK3Q9Y616 596 aa17.51■□□□□ 0.39
CHMP1A-209ENST00000550872 MUC3AQ02505 3323 aa17.51■□□□□ 0.39
CHMP1A-209ENST00000550872 SCN1AP35498 2009 aa17.5■□□□□ 0.39
CHMP1A-209ENST00000550872 PER2O15055 1255 aa17.5■□□□□ 0.39
CHMP1A-209ENST00000550872 LILRB3O75022 631 aa17.5■□□□□ 0.39
CHMP1A-209ENST00000550872 PHACTR2O75167 634 aa17.5■□□□□ 0.39
CHMP1A-209ENST00000550872 TKTP29401 623 aaKnown RBP17.5■□□□□ 0.39
CHMP1A-209ENST00000550872 PNPLA4P41247 253 aa17.5■□□□□ 0.39
CHMP1A-209ENST00000550872 NRIP1P48552 1158 aa17.5■□□□□ 0.39
CHMP1A-209ENST00000550872 CLDN10P78369 228 aa17.5■□□□□ 0.39
CHMP1A-209ENST00000550872 BFSP1Q12934 665 aa17.5■□□□□ 0.39
CHMP1A-209ENST00000550872 BIRC3Q13489 604 aa17.5■□□□□ 0.39
CHMP1A-209ENST00000550872 SKIV2LQ15477 1246 aaKnown RBP17.5■□□□□ 0.39
CHMP1A-209ENST00000550872 SKOR2Q2VWA4 1001 aaPredicted RBP17.5■□□□□ 0.39
CHMP1A-209ENST00000550872 RTP2Q5QGT7 225 aa17.5■□□□□ 0.39
CHMP1A-209ENST00000550872 GPR65Q8IYL9 337 aa17.5■□□□□ 0.39
CHMP1A-209ENST00000550872 ZNF560Q96MR9 790 aa17.5■□□□□ 0.39
CHMP1A-209ENST00000550872 SRRTQ9BXP5 876 aaKnown RBP17.5■□□□□ 0.39
CHMP1A-209ENST00000550872 SIX4Q9UIU6 781 aa17.5■□□□□ 0.39
CHMP1A-209ENST00000550872 ATG2AQ2TAZ0 1938 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms