RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 MYO9BQ13459 2157 aa23.14■■□□□ 1.3
NEK3-202ENST00000550841 SF3B1O75533 1304 aaKnown RBP eCLIP23.14■■□□□ 1.3
NEK3-202ENST00000550841 SMTNL1A8MU46 457 aa23.14■■□□□ 1.29
NEK3-202ENST00000550841 KIF4AO95239 1232 aa23.14■■□□□ 1.29
NEK3-202ENST00000550841 KRT19P08727 400 aa23.14■■□□□ 1.29
NEK3-202ENST00000550841 GUCY2FP51841 1108 aa23.14■■□□□ 1.29
NEK3-202ENST00000550841 MARSP56192 900 aaKnown RBP23.14■■□□□ 1.29
NEK3-202ENST00000550841 TCERG1LQ5VWI1 586 aa23.14■■□□□ 1.29
NEK3-202ENST00000550841 PDE12Q6L8Q7 609 aaKnown RBP23.14■■□□□ 1.29
NEK3-202ENST00000550841 C1orf127Q8N9H9 656 aa23.14■■□□□ 1.29
NEK3-202ENST00000550841 ZNF516Q92618 1163 aa23.14■■□□□ 1.29
NEK3-202ENST00000550841 RABGGTAQ92696 567 aa23.14■■□□□ 1.29
NEK3-202ENST00000550841 ZNF560Q96MR9 790 aa23.14■■□□□ 1.29
NEK3-202ENST00000550841 GZF1Q9H116 711 aaPredicted RBP23.14■■□□□ 1.29
NEK3-202ENST00000550841 ALG13Q9NP73 1137 aaKnown RBP23.14■■□□□ 1.29
NEK3-202ENST00000550841 CACNG4Q9UBN1 327 aa23.14■■□□□ 1.29
NEK3-202ENST00000550841 AGAP1Q9UPQ3 857 aa23.14■■□□□ 1.29
NEK3-202ENST00000550841 ARHGEF37A1IGU5 675 aa23.13■■□□□ 1.29
NEK3-202ENST00000550841 C4BPAP04003 597 aaKnown RBP23.13■■□□□ 1.29
NEK3-202ENST00000550841 ITGB3P05106 788 aa23.13■■□□□ 1.29
NEK3-202ENST00000550841 DLG4P78352 724 aa23.13■■□□□ 1.29
NEK3-202ENST00000550841 MYL5Q02045 173 aa23.13■■□□□ 1.29
NEK3-202ENST00000550841 MYO1EQ12965 1108 aa23.13■■□□□ 1.29
NEK3-202ENST00000550841 BIRC3Q13489 604 aa23.13■■□□□ 1.29
NEK3-202ENST00000550841 TRPC3Q13507 836 aa23.13■■□□□ 1.29
NEK3-202ENST00000550841 FUT10Q6P4F1 479 aa23.13■■□□□ 1.29
NEK3-202ENST00000550841 CREBRFQ8IUR6 639 aa23.13■■□□□ 1.29
NEK3-202ENST00000550841 LRRC52Q8N7C0 313 aa23.13■■□□□ 1.29
NEK3-202ENST00000550841 POF1BQ8WVV4 589 aa23.13■■□□□ 1.29
NEK3-202ENST00000550841 LMCD1Q9NZU5 365 aa23.13■■□□□ 1.29
NEK3-202ENST00000550841 SSX2IPQ9Y2D8 614 aa23.13■■□□□ 1.29
NEK3-202ENST00000550841 NFE2L3Q9Y4A8 694 aa23.13■■□□□ 1.29
NEK3-202ENST00000550841 PTPRJQ12913 1337 aa23.12■■□□□ 1.29
NEK3-202ENST00000550841 GRM6O15303 877 aa23.12■■□□□ 1.29
NEK3-202ENST00000550841 POLR2BP30876 1174 aaKnown RBP23.12■■□□□ 1.29
NEK3-202ENST00000550841 TAF6P49848 677 aa23.12■■□□□ 1.29
NEK3-202ENST00000550841 ZNF165P49910 485 aa23.12■■□□□ 1.29
NEK3-202ENST00000550841 SV2CQ496J9 727 aa23.12■■□□□ 1.29
NEK3-202ENST00000550841 DCAF17Q5H9S7 520 aaPredicted RBP23.12■■□□□ 1.29
NEK3-202ENST00000550841 TMEM173Q86WV6 379 aaPredicted RBP23.12■■□□□ 1.29
NEK3-202ENST00000550841 PRDM12Q9H4Q4 367 aa23.12■■□□□ 1.29
NEK3-202ENST00000550841 TMEM8AQ9HCN3 771 aa23.12■■□□□ 1.29
NEK3-202ENST00000550841 EPOPA6NHQ4 379 aa23.11■■□□□ 1.29
NEK3-202ENST00000550841 SOD2P04179 222 aa23.11■■□□□ 1.29
NEK3-202ENST00000550841 TRIM49P0CI25 452 aa23.11■■□□□ 1.29
NEK3-202ENST00000550841 TRIM49CP0CI26 452 aa23.11■■□□□ 1.29
NEK3-202ENST00000550841 ATICP31939 592 aa23.11■■□□□ 1.29
NEK3-202ENST00000550841 LILRA4P59901 499 aa23.11■■□□□ 1.29
NEK3-202ENST00000550841 USP41Q3LFD5 358 aa23.11■■□□□ 1.29
NEK3-202ENST00000550841 ZACNQ401N2 412 aa23.11■■□□□ 1.29
NEK3-202ENST00000550841 C1orf220Q5T0J3 134 aa23.11■■□□□ 1.29
NEK3-202ENST00000550841 KRT39Q6A163 491 aa23.11■■□□□ 1.29
NEK3-202ENST00000550841 CD300LGQ6UXG3 332 aa23.11■■□□□ 1.29
NEK3-202ENST00000550841 DSTYKQ6XUX3 929 aa23.11■■□□□ 1.29
NEK3-202ENST00000550841 SV2AQ7L0J3 742 aa23.11■■□□□ 1.29
NEK3-202ENST00000550841 VPS52Q8N1B4 723 aa23.11■■□□□ 1.29
NEK3-202ENST00000550841 HASPINQ8TF76 798 aa23.11■■□□□ 1.29
NEK3-202ENST00000550841 GDPD5Q8WTR4 605 aa23.11■■□□□ 1.29
NEK3-202ENST00000550841 BCL7CQ8WUZ0 217 aaPredicted RBP23.11■■□□□ 1.29
NEK3-202ENST00000550841 CNOT6LQ96LI5 555 aaKnown RBP23.11■■□□□ 1.29
NEK3-202ENST00000550841 NGRNQ9NPE2 291 aaKnown RBP23.11■■□□□ 1.29
NEK3-202ENST00000550841 TLR9Q9NR96 1032 aa23.11■■□□□ 1.29
NEK3-202ENST00000550841 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.11■■□□□ 1.29
NEK3-202ENST00000550841 RFXAPO00287 272 aa23.1■■□□□ 1.29
NEK3-202ENST00000550841 LPXNO60711 386 aa23.1■■□□□ 1.29
NEK3-202ENST00000550841 N4BP1O75113 896 aaKnown RBP23.1■■□□□ 1.29
NEK3-202ENST00000550841 MTIF2P46199 727 aaKnown RBP23.1■■□□□ 1.29
NEK3-202ENST00000550841 GCLMP48507 274 aa23.1■■□□□ 1.29
NEK3-202ENST00000550841 CETN1Q12798 172 aa23.1■■□□□ 1.29
NEK3-202ENST00000550841 KIAA1841Q6NSI8 718 aa23.1■■□□□ 1.29
NEK3-202ENST00000550841 TMC7Q7Z402 723 aa23.1■■□□□ 1.29
NEK3-202ENST00000550841 TRIM59Q8IWR1 403 aa23.1■■□□□ 1.29
NEK3-202ENST00000550841 GPR65Q8IYL9 337 aa23.1■■□□□ 1.29
NEK3-202ENST00000550841 C3orf58Q8NDZ4 430 aa23.1■■□□□ 1.29
NEK3-202ENST00000550841 CXorf38Q8TB03 319 aa23.1■■□□□ 1.29
NEK3-202ENST00000550841 MICAL1Q8TDZ2 1067 aa23.1■■□□□ 1.29
NEK3-202ENST00000550841 PPM1EQ8WY54 764 aa23.1■■□□□ 1.29
NEK3-202ENST00000550841 SUSD3Q96L08 255 aa23.1■■□□□ 1.29
NEK3-202ENST00000550841 ANP32EQ9BTT0 268 aa23.1■■□□□ 1.29
NEK3-202ENST00000550841 HERC2P3Q9BVR0 1158 aa23.1■■□□□ 1.29
NEK3-202ENST00000550841 GPR62Q9BZJ7 368 aa23.1■■□□□ 1.29
NEK3-202ENST00000550841 SIX4Q9UIU6 781 aa23.1■■□□□ 1.29
NEK3-202ENST00000550841 BECN2A8MW95 431 aa23.09■■□□□ 1.29
NEK3-202ENST00000550841 F8W810 466 aa23.09■■□□□ 1.29
NEK3-202ENST00000550841 EFEMP2O95967 443 aa23.09■■□□□ 1.29
NEK3-202ENST00000550841 PRKCSHP14314 528 aaPredicted RBP23.09■■□□□ 1.29
NEK3-202ENST00000550841 EEF1GP26641 437 aaKnown RBP23.09■■□□□ 1.29
NEK3-202ENST00000550841 AARSP49588 968 aaKnown RBP eCLIP23.09■■□□□ 1.29
NEK3-202ENST00000550841 PPP3CAQ08209 521 aa23.09■■□□□ 1.29
NEK3-202ENST00000550841 SGSM1Q2NKQ1 1148 aa23.09■■□□□ 1.29
NEK3-202ENST00000550841 FAM171A1Q5VUB5 890 aa23.09■■□□□ 1.29
NEK3-202ENST00000550841 TDRD10Q5VZ19 366 aaKnown RBP23.09■■□□□ 1.29
NEK3-202ENST00000550841 PDXDC1Q6P996 788 aa23.09■■□□□ 1.29
NEK3-202ENST00000550841 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.09■■□□□ 1.29
NEK3-202ENST00000550841 C15orf39Q6ZRI6 1047 aa23.09■■□□□ 1.29
NEK3-202ENST00000550841 IRF2BP1Q8IU81 584 aa23.09■■□□□ 1.29
NEK3-202ENST00000550841 RNF168Q8IYW5 571 aaPredicted RBP23.09■■□□□ 1.29
NEK3-202ENST00000550841 APPL2Q8NEU8 664 aa23.09■■□□□ 1.29
NEK3-202ENST00000550841 ANKRD20A12PQ8NF67 263 aa23.09■■□□□ 1.29
NEK3-202ENST00000550841 SLC35C1Q96A29 364 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms