RNA–Protein interactions for RNA: ENST00000547247.5

SMARCD1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 1 (best)

Gene SMARCD1, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-203ENST00000547247 KRT19P08727 400 aa25.01■■□□□ 1.59
SMARCD1-203ENST00000547247 POLR2BP30876 1174 aaKnown RBP25.01■■□□□ 1.59
SMARCD1-203ENST00000547247 GPM6BQ13491 265 aa25.01■■□□□ 1.59
SMARCD1-203ENST00000547247 LRSAM1Q6UWE0 723 aa25.01■■□□□ 1.59
SMARCD1-203ENST00000547247 TRIM59Q8IWR1 403 aa25.01■■□□□ 1.59
SMARCD1-203ENST00000547247 AOPEPQ8N6M6 819 aa25.01■■□□□ 1.59
SMARCD1-203ENST00000547247 HASPINQ8TF76 798 aa25.01■■□□□ 1.59
SMARCD1-203ENST00000547247 ALG13Q9NP73 1137 aaKnown RBP25.01■■□□□ 1.59
SMARCD1-203ENST00000547247 MAGEC2Q9UBF1 373 aaPredicted RBP25.01■■□□□ 1.59
SMARCD1-203ENST00000547247 PUF60Q9UHX1 559 aaKnown RBP25.01■■□□□ 1.59
SMARCD1-203ENST00000547247 AGAP1Q9UPQ3 857 aa25.01■■□□□ 1.59
SMARCD1-203ENST00000547247 NUB1Q9Y5A7 615 aa25.01■■□□□ 1.59
SMARCD1-203ENST00000547247 GTF2H1P32780 548 aa25■■□□□ 1.59
SMARCD1-203ENST00000547247 RBP5P82980 135 aa25■■□□□ 1.59
SMARCD1-203ENST00000547247 PPP3CAQ08209 521 aa25■■□□□ 1.59
SMARCD1-203ENST00000547247 BIRC3Q13489 604 aa25■■□□□ 1.59
SMARCD1-203ENST00000547247 SV2AQ7L0J3 742 aa25■■□□□ 1.59
SMARCD1-203ENST00000547247 SLC35C1Q96A29 364 aa25■■□□□ 1.59
SMARCD1-203ENST00000547247 LZTS1Q9Y250 596 aa25■■□□□ 1.59
SMARCD1-203ENST00000547247 EPOPA6NHQ4 379 aa24.99■■□□□ 1.59
SMARCD1-203ENST00000547247 PPEF2O14830 753 aa24.99■■□□□ 1.59
SMARCD1-203ENST00000547247 PHACTR2O75167 634 aa24.99■■□□□ 1.59
SMARCD1-203ENST00000547247 IGFBP6P24592 240 aaPredicted RBP24.99■■□□□ 1.59
SMARCD1-203ENST00000547247 GCLMP48507 274 aa24.99■■□□□ 1.59
SMARCD1-203ENST00000547247 UBE3AQ05086 875 aa24.99■■□□□ 1.59
SMARCD1-203ENST00000547247 GRIN2CQ14957 1233 aa24.99■■□□□ 1.59
SMARCD1-203ENST00000547247 ZACNQ401N2 412 aa24.99■■□□□ 1.59
SMARCD1-203ENST00000547247 HSP90AA4PQ58FG1 418 aa24.99■■□□□ 1.59
SMARCD1-203ENST00000547247 TDRD10Q5VZ19 366 aaKnown RBP24.99■■□□□ 1.59
SMARCD1-203ENST00000547247 FUT10Q6P4F1 479 aa24.99■■□□□ 1.59
SMARCD1-203ENST00000547247 DDX53Q86TM3 631 aaKnown RBP24.99■■□□□ 1.59
SMARCD1-203ENST00000547247 CXorf38Q8TB03 319 aa24.99■■□□□ 1.59
SMARCD1-203ENST00000547247 SPPL3Q8TCT6 385 aa24.99■■□□□ 1.59
SMARCD1-203ENST00000547247 MMRN2Q9H8L6 949 aa24.99■■□□□ 1.59
SMARCD1-203ENST00000547247 FANCLQ9NW38 375 aa24.99■■□□□ 1.59
SMARCD1-203ENST00000547247 STK39Q9UEW8 545 aa24.99■■□□□ 1.59
SMARCD1-203ENST00000547247 SIX4Q9UIU6 781 aa24.99■■□□□ 1.59
SMARCD1-203ENST00000547247 SMTNL1A8MU46 457 aa24.98■■□□□ 1.59
SMARCD1-203ENST00000547247 TRAPPC3O43617 180 aa24.98■■□□□ 1.59
SMARCD1-203ENST00000547247 PAX3P23760 479 aa24.98■■□□□ 1.59
SMARCD1-203ENST00000547247 PNPLA4P41247 253 aa24.98■■□□□ 1.59
SMARCD1-203ENST00000547247 NCAPHQ15003 741 aa24.98■■□□□ 1.59
SMARCD1-203ENST00000547247 CD300LGQ6UXG3 332 aa24.98■■□□□ 1.59
SMARCD1-203ENST00000547247 LRRC52Q8N7C0 313 aa24.98■■□□□ 1.59
SMARCD1-203ENST00000547247 ZNF560Q96MR9 790 aa24.98■■□□□ 1.59
SMARCD1-203ENST00000547247 GUCD1Q96NT3 240 aa24.98■■□□□ 1.59
SMARCD1-203ENST00000547247 TMEM8AQ9HCN3 771 aa24.98■■□□□ 1.59
SMARCD1-203ENST00000547247 UTP18Q9Y5J1 556 aaKnown RBP eCLIP24.98■■□□□ 1.59
SMARCD1-203ENST00000547247 SF3B1O75533 1304 aaKnown RBP eCLIP24.98■■□□□ 1.59
SMARCD1-203ENST00000547247 MYO9BQ13459 2157 aa24.98■■□□□ 1.59
SMARCD1-203ENST00000547247 BECN2A8MW95 431 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 MTIF2P46199 727 aaKnown RBP24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 LILRA4P59901 499 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 ZNF445P59923 1031 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 ELAVL2Q12926 359 aaKnown RBP24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 TRPC3Q13507 836 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 KRT39Q6A163 491 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 C15orf39Q6ZRI6 1047 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 POF1BQ8WVV4 589 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 GPR62Q9BZJ7 368 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 TSPY26PQ9H489 355 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 RFXAPO00287 272 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 GRM6O15303 877 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 CST3P01034 146 aaPredicted RBP24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 BRCC3P46736 316 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 TAF6P49848 677 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 MXI1P50539 228 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 CDKAL1Q5VV42 579 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 SCARA3Q6AZY7 606 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 DHX40Q8IX18 779 aaKnown RBP24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 GDPD5Q8WTR4 605 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 PRDM12Q9H4Q4 367 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 CBX8Q9HC52 389 aa24.97■■□□□ 1.59
SMARCD1-203ENST00000547247 PLXNA4Q9HCM2 1894 aa24.96■■□□□ 1.59
SMARCD1-203ENST00000547247 KCNJ18B7U540 433 aa24.96■■□□□ 1.59
SMARCD1-203ENST00000547247 EFEMP2O95967 443 aa24.96■■□□□ 1.59
SMARCD1-203ENST00000547247 EEF1GP26641 437 aaKnown RBP24.96■■□□□ 1.59
SMARCD1-203ENST00000547247 MYO1EQ12965 1108 aa24.96■■□□□ 1.59
SMARCD1-203ENST00000547247 NCOA4Q13772 614 aa24.96■■□□□ 1.59
SMARCD1-203ENST00000547247 KCNJ12Q14500 433 aa24.96■■□□□ 1.59
SMARCD1-203ENST00000547247 IQCB1Q15051 598 aa24.96■■□□□ 1.59
SMARCD1-203ENST00000547247 SV2CQ496J9 727 aa24.96■■□□□ 1.59
SMARCD1-203ENST00000547247 VPS52Q8N1B4 723 aa24.96■■□□□ 1.59
SMARCD1-203ENST00000547247 CDX2Q99626 313 aaPredicted RBP24.96■■□□□ 1.59
SMARCD1-203ENST00000547247 VN1R3Q9BXE9 311 aa24.96■■□□□ 1.59
SMARCD1-203ENST00000547247 LMAN2LQ9H0V9 348 aa24.96■■□□□ 1.59
SMARCD1-203ENST00000547247 SOD2P04179 222 aa24.95■■□□□ 1.58
SMARCD1-203ENST00000547247 AARSP49588 968 aaKnown RBP eCLIP24.95■■□□□ 1.58
SMARCD1-203ENST00000547247 KCNH2Q12809 1159 aa24.95■■□□□ 1.58
SMARCD1-203ENST00000547247 TIGD5Q53EQ6 642 aa24.95■■□□□ 1.58
SMARCD1-203ENST00000547247 TCP11X2Q5H9J9 407 aa24.95■■□□□ 1.58
SMARCD1-203ENST00000547247 RNF168Q8IYW5 571 aaPredicted RBP24.95■■□□□ 1.58
SMARCD1-203ENST00000547247 HPDLQ96IR7 371 aa24.95■■□□□ 1.58
SMARCD1-203ENST00000547247 SUSD3Q96L08 255 aa24.95■■□□□ 1.58
SMARCD1-203ENST00000547247 SCN1AP35498 2009 aa24.94■■□□□ 1.58
SMARCD1-203ENST00000547247 I3L4J1 428 aa24.94■■□□□ 1.58
SMARCD1-203ENST00000547247 SPTLC1O15269 473 aa24.94■■□□□ 1.58
SMARCD1-203ENST00000547247 VNN1O95497 513 aa24.94■■□□□ 1.58
SMARCD1-203ENST00000547247 DNAJB1P25685 340 aa24.94■■□□□ 1.58
SMARCD1-203ENST00000547247 FMO5P49326 533 aa24.94■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms