RNA–Protein interactions for RNA: ENST00000545998.1

HMGA2-211, Transcript of high mobility group AT-hook 2, humanhuman

TSL 1 (best)

Gene HMGA2, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-211ENST00000545998 INTS8Q75QN2 995 aaKnown RBP22.13■■□□□ 1.13
HMGA2-211ENST00000545998 TMC7Q7Z402 723 aa22.13■■□□□ 1.13
HMGA2-211ENST00000545998 TMC2Q8TDI7 906 aa22.13■■□□□ 1.13
HMGA2-211ENST00000545998 ZNF516Q92618 1163 aa22.13■■□□□ 1.13
HMGA2-211ENST00000545998 CEP63Q96MT8 703 aa22.13■■□□□ 1.13
HMGA2-211ENST00000545998 MED15Q96RN5 788 aa22.13■■□□□ 1.13
HMGA2-211ENST00000545998 NGRNQ9NPE2 291 aaKnown RBP22.13■■□□□ 1.13
HMGA2-211ENST00000545998 ENTPD7Q9NQZ7 604 aa22.13■■□□□ 1.13
HMGA2-211ENST00000545998 ITGA11Q9UKX5 1188 aa22.13■■□□□ 1.13
HMGA2-211ENST00000545998 PCDHGC5Q9Y5F6 944 aa22.13■■□□□ 1.13
HMGA2-211ENST00000545998 SLC16A3O15427 465 aaKnown RBP22.12■■□□□ 1.13
HMGA2-211ENST00000545998 TNNC2P02585 160 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 CTSAP10619 480 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 TNNI1P19237 187 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 DLG4P78352 724 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 ENPEPQ07075 957 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 ELAVL2Q12926 359 aaKnown RBP22.12■■□□□ 1.13
HMGA2-211ENST00000545998 CHST7Q9NS84 486 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 DACH1Q9UI36 760 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 SIX4Q9UIU6 781 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 ITGB3P05106 788 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 EPB41P11171 864 aaKnown RBP22.12■■□□□ 1.13
HMGA2-211ENST00000545998 BRCC3P46736 316 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 AARSP49588 968 aaKnown RBP eCLIP22.12■■□□□ 1.13
HMGA2-211ENST00000545998 BFSP1Q12934 665 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 TIGD5Q53EQ6 642 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 C1orf220Q5T0J3 134 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 PLPP4Q5VZY2 271 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 SCARA3Q6AZY7 606 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 SASS6Q6UVJ0 657 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 CSGALNACT2Q8N6G5 542 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 MICAL1Q8TDZ2 1067 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 NUB1Q9Y5A7 615 aa22.12■■□□□ 1.13
HMGA2-211ENST00000545998 TRAPPC3O43617 180 aa22.11■■□□□ 1.13
HMGA2-211ENST00000545998 POLR2BP30876 1174 aaKnown RBP22.11■■□□□ 1.13
HMGA2-211ENST00000545998 VAMP7P51809 220 aa22.11■■□□□ 1.13
HMGA2-211ENST00000545998 LILRA4P59901 499 aa22.11■■□□□ 1.13
HMGA2-211ENST00000545998 SMC1AQ14683 1233 aaKnown RBP22.11■■□□□ 1.13
HMGA2-211ENST00000545998 SKOR2Q2VWA4 1001 aaPredicted RBP22.11■■□□□ 1.13
HMGA2-211ENST00000545998 USP41Q3LFD5 358 aa22.11■■□□□ 1.13
HMGA2-211ENST00000545998 KIAA0319Q5VV43 1072 aa22.11■■□□□ 1.13
HMGA2-211ENST00000545998 TRAPPC11Q7Z392 1133 aa22.11■■□□□ 1.13
HMGA2-211ENST00000545998 FILIP1Q7Z7B0 1213 aa22.11■■□□□ 1.13
HMGA2-211ENST00000545998 AUTS2Q8WXX7 1259 aa22.11■■□□□ 1.13
HMGA2-211ENST00000545998 B3GALT6Q96L58 329 aa22.11■■□□□ 1.13
HMGA2-211ENST00000545998 NSUN3Q9H649 340 aaKnown RBP22.11■■□□□ 1.13
HMGA2-211ENST00000545998 STXBP5LQ9Y2K9 1186 aa22.11■■□□□ 1.13
HMGA2-211ENST00000545998 IRAK3Q9Y616 596 aa22.11■■□□□ 1.13
HMGA2-211ENST00000545998 BRWD1Q9NSI6 2320 aa22.1■■□□□ 1.13
HMGA2-211ENST00000545998 HIDE1A8MVS5 230 aa22.1■■□□□ 1.13
HMGA2-211ENST00000545998 I3L4J1 428 aa22.1■■□□□ 1.13
HMGA2-211ENST00000545998 LILRB3O75022 631 aa22.1■■□□□ 1.13
HMGA2-211ENST00000545998 CXCL14O95715 111 aa22.1■■□□□ 1.13
HMGA2-211ENST00000545998 KRT13P13646 458 aa22.1■■□□□ 1.13
HMGA2-211ENST00000545998 ERCC5P28715 1186 aaPredicted RBP22.1■■□□□ 1.13
HMGA2-211ENST00000545998 DSG1Q02413 1049 aa22.1■■□□□ 1.13
HMGA2-211ENST00000545998 BMS1Q14692 1282 aaKnown RBP22.1■■□□□ 1.13
HMGA2-211ENST00000545998 NFKBIBQ15653 356 aa22.1■■□□□ 1.13
HMGA2-211ENST00000545998 PTPN14Q15678 1187 aa22.1■■□□□ 1.13
HMGA2-211ENST00000545998 CT47A1Q5JQC4 288 aaPredicted RBP22.1■■□□□ 1.13
HMGA2-211ENST00000545998 FAM171A1Q5VUB5 890 aa22.1■■□□□ 1.13
HMGA2-211ENST00000545998 USP37Q86T82 979 aa22.1■■□□□ 1.13
HMGA2-211ENST00000545998 MRPL43Q8N983 215 aaKnown RBP22.1■■□□□ 1.13
HMGA2-211ENST00000545998 SUSD3Q96L08 255 aa22.1■■□□□ 1.13
HMGA2-211ENST00000545998 AGAP1Q9UPQ3 857 aa22.1■■□□□ 1.13
HMGA2-211ENST00000545998 C2orf71A6NGG8 1288 aa22.09■■□□□ 1.13
HMGA2-211ENST00000545998 IKBKBO14920 756 aa22.09■■□□□ 1.13
HMGA2-211ENST00000545998 SPTLC1O15269 473 aa22.09■■□□□ 1.13
HMGA2-211ENST00000545998 URODP06132 367 aa22.09■■□□□ 1.13
HMGA2-211ENST00000545998 FGFR3P22607 806 aa22.09■■□□□ 1.13
HMGA2-211ENST00000545998 PAX3P23760 479 aa22.09■■□□□ 1.13
HMGA2-211ENST00000545998 GLUD2P49448 558 aa22.09■■□□□ 1.13
HMGA2-211ENST00000545998 AP3M2P53677 418 aa22.09■■□□□ 1.13
HMGA2-211ENST00000545998 RBP5P82980 135 aa22.09■■□□□ 1.13
HMGA2-211ENST00000545998 RTP2Q5QGT7 225 aa22.09■■□□□ 1.13
HMGA2-211ENST00000545998 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.09■■□□□ 1.13
HMGA2-211ENST00000545998 ADGRD2Q7Z7M1 963 aa22.09■■□□□ 1.13
HMGA2-211ENST00000545998 LRRC52Q8N7C0 313 aa22.09■■□□□ 1.13
HMGA2-211ENST00000545998 TTPALQ9BTX7 342 aa22.09■■□□□ 1.13
HMGA2-211ENST00000545998 M0QZQ0 153 aa22.08■■□□□ 1.13
HMGA2-211ENST00000545998 C4BPAP04003 597 aaKnown RBP22.08■■□□□ 1.13
HMGA2-211ENST00000545998 KRT19P08727 400 aa22.08■■□□□ 1.13
HMGA2-211ENST00000545998 TRIM49P0CI25 452 aa22.08■■□□□ 1.13
HMGA2-211ENST00000545998 TRIM49CP0CI26 452 aa22.08■■□□□ 1.13
HMGA2-211ENST00000545998 TAF6P49848 677 aa22.08■■□□□ 1.13
HMGA2-211ENST00000545998 STX1AQ16623 288 aa22.08■■□□□ 1.13
HMGA2-211ENST00000545998 TCEAL5Q5H9L2 206 aa22.08■■□□□ 1.13
HMGA2-211ENST00000545998 KIAA1841Q6NSI8 718 aa22.08■■□□□ 1.13
HMGA2-211ENST00000545998 GPR65Q8IYL9 337 aa22.08■■□□□ 1.13
HMGA2-211ENST00000545998 MICALL1Q8N3F8 863 aa22.08■■□□□ 1.13
HMGA2-211ENST00000545998 SRRTQ9BXP5 876 aaKnown RBP22.08■■□□□ 1.13
HMGA2-211ENST00000545998 MRPL17Q9NRX2 175 aaKnown RBP22.08■■□□□ 1.13
HMGA2-211ENST00000545998 ANO10Q9NW15 660 aa22.08■■□□□ 1.13
HMGA2-211ENST00000545998 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP22.08■■□□□ 1.12
HMGA2-211ENST00000545998 C2CD2LO14523 706 aa22.08■■□□□ 1.12
HMGA2-211ENST00000545998 TKTP29401 623 aaKnown RBP22.08■■□□□ 1.12
HMGA2-211ENST00000545998 PNPLA4P41247 253 aa22.08■■□□□ 1.12
HMGA2-211ENST00000545998 TYRO3Q06418 890 aa22.08■■□□□ 1.12
HMGA2-211ENST00000545998 TDRD10Q5VZ19 366 aaKnown RBP22.08■■□□□ 1.12
HMGA2-211ENST00000545998 FRMD5Q7Z6J6 570 aa22.08■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms