RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 CNGA4Q8IV77 575 aa17.23■□□□□ 0.35
PRPF40A-212ENST00000545856 ZNF689Q96CS4 500 aaPredicted RBP17.23■□□□□ 0.35
PRPF40A-212ENST00000545856 CASD1Q96PB1 797 aa17.23■□□□□ 0.35
PRPF40A-212ENST00000545856 FAM193BQ96PV7 902 aaPredicted RBP17.23■□□□□ 0.35
PRPF40A-212ENST00000545856 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.23■□□□□ 0.353e-14■□□□□ 11.1
PRPF40A-212ENST00000545856 TTYH3Q9C0H2 523 aa17.23■□□□□ 0.35
PRPF40A-212ENST00000545856 DNAI2Q9GZS0 605 aa17.23■□□□□ 0.35
PRPF40A-212ENST00000545856 MMRN2Q9H8L6 949 aa17.23■□□□□ 0.35
PRPF40A-212ENST00000545856 TBC1D13Q9NVG8 400 aa17.23■□□□□ 0.35
PRPF40A-212ENST00000545856 SIX4Q9UIU6 781 aa17.23■□□□□ 0.35
PRPF40A-212ENST00000545856 POLR2BP30876 1174 aaKnown RBP17.22■□□□□ 0.35
PRPF40A-212ENST00000545856 TAF6P49848 677 aa17.22■□□□□ 0.35
PRPF40A-212ENST00000545856 NOP14P78316 857 aaKnown RBP17.22■□□□□ 0.35
PRPF40A-212ENST00000545856 RNASELQ05823 741 aaKnown RBP17.22■□□□□ 0.35
PRPF40A-212ENST00000545856 GLRA4Q5JXX5 417 aa17.22■□□□□ 0.35
PRPF40A-212ENST00000545856 KLHDC7AQ5VTJ3 777 aa17.22■□□□□ 0.35
PRPF40A-212ENST00000545856 LMBRD2Q68DH5 695 aaPredicted RBP17.22■□□□□ 0.35
PRPF40A-212ENST00000545856 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.22■□□□□ 0.351e-7■■■■■ 28.2
PRPF40A-212ENST00000545856 DPH6Q7L8W6 267 aa17.22■□□□□ 0.35
PRPF40A-212ENST00000545856 PPFIBP1Q86W92 1011 aa17.22■□□□□ 0.35
PRPF40A-212ENST00000545856 LSM14BQ9BX40 385 aaKnown RBP17.22■□□□□ 0.35
PRPF40A-212ENST00000545856 NIF3L1Q9GZT8 377 aa17.22■□□□□ 0.35
PRPF40A-212ENST00000545856 XYLT2Q9H1B5 865 aa17.22■□□□□ 0.35
PRPF40A-212ENST00000545856 CYP3A43Q9HB55 503 aa17.22■□□□□ 0.35
PRPF40A-212ENST00000545856 GDAP2Q9NXN4 497 aa17.22■□□□□ 0.35
PRPF40A-212ENST00000545856 TUBGCP4Q9UGJ1 667 aa17.22■□□□□ 0.35
PRPF40A-212ENST00000545856 ZMYND8Q9ULU4 1186 aaPredicted RBP17.22■□□□□ 0.35
PRPF40A-212ENST00000545856 SLC4A7Q9Y6M7 1214 aa17.22■□□□□ 0.35
PRPF40A-212ENST00000545856 GJB5O95377 273 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 KRT19P08727 400 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 CCDC172P0C7W6 258 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 ACRP10323 421 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 UCHL3P15374 230 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 MFAP3P55082 362 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 HTRA4P83105 476 aaPredicted RBP17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 ZBED6P86452 979 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 ARID5BQ14865 1188 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 UPP1Q16831 310 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 ZNF667Q5HYK9 610 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 DCLRE1AQ6PJP8 1040 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 DRC7Q8IY82 874 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 SYN2Q92777 582 aaPredicted RBP17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 HPDLQ96IR7 371 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 CRACR2AQ9BSW2 395 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 GANQ9H2C0 597 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 SIX2Q9NPC8 291 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 CAPN11Q9UMQ6 739 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 AGAP1Q9UPQ3 857 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 INPP5FQ9Y2H2 1132 aa17.21■□□□□ 0.35
PRPF40A-212ENST00000545856 ZBBXA8MT70 800 aa17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 FGFR1P11362 822 aa17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 SYN1P17600 705 aa17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 SLC9A1P19634 815 aa17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 AARSP49588 968 aaKnown RBP eCLIP17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 ELAVL2Q12926 359 aaKnown RBP17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 TBX2Q13207 712 aaPredicted RBP17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 DPY19L2P1Q6NXN4 242 aa17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 OTOP2Q7RTS6 562 aa17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 CACNA2D4Q7Z3S7 1137 aa17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 TMC6Q7Z403 805 aa17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 COLGALT2Q8IYK4 626 aa17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 C18orf25Q96B23 403 aaPredicted RBP17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 NAA15Q9BXJ9 866 aaKnown RBP17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 STK33Q9BYT3 514 aa17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 FAM207AQ9NSI2 230 aaPredicted RBP17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 PLAGL2Q9UPG8 496 aa17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 LUC7L2Q9Y383 392 aaKnown RBP17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 INSL6Q9Y581 213 aa17.2■□□□□ 0.34
PRPF40A-212ENST00000545856 PODXLO00592 558 aa17.19■□□□□ 0.34
PRPF40A-212ENST00000545856 TRAPPC3O43617 180 aa17.19■□□□□ 0.34
PRPF40A-212ENST00000545856 CST3P01034 146 aaPredicted RBP17.19■□□□□ 0.34
PRPF40A-212ENST00000545856 POMCP01189 267 aa17.19■□□□□ 0.34
PRPF40A-212ENST00000545856 MYL6P60660 151 aa17.19■□□□□ 0.34
PRPF40A-212ENST00000545856 TNNC1P63316 161 aa17.19■□□□□ 0.34
PRPF40A-212ENST00000545856 SOX4Q06945 474 aaPredicted RBP17.19■□□□□ 0.34
PRPF40A-212ENST00000545856 TOP6BLQ8N6T0 577 aa17.19■□□□□ 0.34
PRPF40A-212ENST00000545856 SEMA4DQ92854 862 aa17.19■□□□□ 0.34
PRPF40A-212ENST00000545856 PPP1R9BQ96SB3 815 aa17.19■□□□□ 0.34
PRPF40A-212ENST00000545856 AAASQ9NRG9 546 aa17.19■□□□□ 0.34
PRPF40A-212ENST00000545856 MIOSQ9NXC5 875 aa17.19■□□□□ 0.34
PRPF40A-212ENST00000545856 DSEQ9UL01 958 aa17.19■□□□□ 0.34
PRPF40A-212ENST00000545856 RWDD3Q9Y3V2 267 aa17.19■□□□□ 0.34
PRPF40A-212ENST00000545856 KIAA1671Q9BY89 1806 aa17.19■□□□□ 0.34
PRPF40A-212ENST00000545856 TBKBP1A7MCY6 615 aa17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 NOL4O94818 638 aa17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 GYPCP04921 128 aa17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 LAG3P18627 525 aa17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 BMP8BP34820 402 aa17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 PPM1AP35813 382 aa17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 MAGEA10P43363 369 aaPredicted RBP17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 LILRA4P59901 499 aa17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 DEFB103AP81534 67 aa17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 CUL2Q13617 745 aa17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 TSR1Q2NL82 804 aaKnown RBP17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 WDR72Q3MJ13 1102 aa17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 TMEM86AQ8N2M4 240 aa17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 PPM1KQ8N3J5 372 aa17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 SP7Q8TDD2 431 aaPredicted RBP17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 SPAG5Q96R06 1193 aa17.18■□□□□ 0.34
PRPF40A-212ENST00000545856 RAD9AQ99638 391 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms