RNA–Protein interactions for RNA: ENST00000544983.1

SNHG1-221, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-221ENST00000544983 NLRC5Q86WI3 1866 aa12.68□□□□□ -0.38
SNHG1-221ENST00000544983 TULP1O00294 542 aaPredicted RBP12.67□□□□□ -0.38
SNHG1-221ENST00000544983 SOX1O00570 391 aaPredicted RBP12.67□□□□□ -0.38
SNHG1-221ENST00000544983 PHACTR2O75167 634 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 ARHGEF15O94989 841 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 STAU1O95793 577 aaKnown RBP12.67□□□□□ -0.38
SNHG1-221ENST00000544983 C4BPAP04003 597 aaKnown RBP12.67□□□□□ -0.38
SNHG1-221ENST00000544983 ITGB3P05106 788 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 TPM2P07951 284 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 AARSP49588 968 aaKnown RBP eCLIP12.67□□□□□ -0.38
SNHG1-221ENST00000544983 TAF6P49848 677 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 TPM4P67936 248 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 GPM6BQ13491 265 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 TRPC3Q13507 836 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 SV2CQ496J9 727 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 TCERG1LQ5VWI1 586 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 C15orf39Q6ZRI6 1047 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 SV2AQ7L0J3 742 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 IRF2BP1Q8IU81 584 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 OR5B17Q8NGF7 314 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 SPPL3Q8TCT6 385 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 PLEKHO2Q8TD55 490 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 ARNTL2Q8WYA1 636 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 ZNF516Q92618 1163 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 SLC35C1Q96A29 364 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 CNOT6LQ96LI5 555 aaKnown RBP12.67□□□□□ -0.38
SNHG1-221ENST00000544983 POP1Q99575 1024 aaKnown RBP12.67□□□□□ -0.38
SNHG1-221ENST00000544983 COL25A1Q9BXS0 654 aaPredicted RBP12.67□□□□□ -0.38
SNHG1-221ENST00000544983 IMPG2Q9BZV3 1241 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 VRTNQ9H8Y1 702 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 GOLGA2P5Q9HBQ8 144 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 NGRNQ9NPE2 291 aaKnown RBP12.67□□□□□ -0.38
SNHG1-221ENST00000544983 HCSTQ9UBK5 93 aa12.67□□□□□ -0.38
SNHG1-221ENST00000544983 PTPRJQ12913 1337 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 TRANK1O15050 2925 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 NT5C1B-RDH14C9J2C7 533 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 SYN3O14994 580 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 KIF4AO95239 1232 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 EFEMP2O95967 443 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 SOD2P04179 222 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 ITGB1P05556 798 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 FAM163BP0C2L3 166 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 P4HA1P13674 534 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 POU3F3P20264 500 aaPredicted RBP12.66□□□□□ -0.38
SNHG1-221ENST00000544983 POLR2BP30876 1174 aaKnown RBP12.66□□□□□ -0.38
SNHG1-221ENST00000544983 MTIF2P46199 727 aaKnown RBP12.66□□□□□ -0.38
SNHG1-221ENST00000544983 MXI1P50539 228 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 LILRA4P59901 499 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 DLG4P78352 724 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 CREMQ03060 361 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 BIRC3Q13489 604 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 NCOA4Q13772 614 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 SGSM1Q2NKQ1 1148 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 USP41Q3LFD5 358 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 TCP11X2Q5H9J9 407 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 DCAF17Q5H9S7 520 aaPredicted RBP12.66□□□□□ -0.38
SNHG1-221ENST00000544983 C1orf220Q5T0J3 134 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 CDKAL1Q5VV42 579 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 FUT10Q6P4F1 479 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.66□□□□□ -0.38
SNHG1-221ENST00000544983 RNF168Q8IYW5 571 aaPredicted RBP12.66□□□□□ -0.38
SNHG1-221ENST00000544983 CCDC150Q8NCX0 1101 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 APPL2Q8NEU8 664 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 CXorf38Q8TB03 319 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 SPATA18Q8TC71 538 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 FAM200AQ8TCP9 573 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 PPP2R3CQ969Q6 453 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 LRCH3Q96II8 777 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 SUSD3Q96L08 255 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 PAAF1Q9BRP4 392 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 OXCT2Q9BYC2 517 aaPredicted RBP12.66□□□□□ -0.38
SNHG1-221ENST00000544983 TSPY26PQ9H489 355 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 TLR9Q9NR96 1032 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 MARCH5Q9NX47 278 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 GDAP2Q9NXN4 497 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 CHD7Q9P2D1 2997 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 DSEQ9UL01 958 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 MTUS1Q9ULD2 1270 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 AGAP1Q9UPQ3 857 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 COQ4Q9Y3A0 265 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 IRAK3Q9Y616 596 aa12.66□□□□□ -0.38
SNHG1-221ENST00000544983 KIAA1671Q9BY89 1806 aa12.65□□□□□ -0.38
SNHG1-221ENST00000544983 FSD2A1L4K1 749 aa12.65□□□□□ -0.38
SNHG1-221ENST00000544983 GTPBP10A4D1E9 387 aaKnown RBP12.65□□□□□ -0.38
SNHG1-221ENST00000544983 LRRC10BA6NIK2 292 aa12.65□□□□□ -0.38
SNHG1-221ENST00000544983 KPNA7A9QM74 516 aa12.65□□□□□ -0.38
SNHG1-221ENST00000544983 KCNJ18B7U540 433 aa12.65□□□□□ -0.38
SNHG1-221ENST00000544983 M0QZQ0 153 aa12.65□□□□□ -0.38
SNHG1-221ENST00000544983 KRT19P08727 400 aa12.65□□□□□ -0.38
SNHG1-221ENST00000544983 TRIM49P0CI25 452 aa12.65□□□□□ -0.38
SNHG1-221ENST00000544983 TRIM49CP0CI26 452 aa12.65□□□□□ -0.38
SNHG1-221ENST00000544983 PBX3P40426 434 aa12.65□□□□□ -0.38
SNHG1-221ENST00000544983 GCLMP48507 274 aa12.65□□□□□ -0.38
SNHG1-221ENST00000544983 FMO5P49326 533 aa12.65□□□□□ -0.38
SNHG1-221ENST00000544983 PPP3CAQ08209 521 aa12.65□□□□□ -0.38
SNHG1-221ENST00000544983 KCNH2Q12809 1159 aa12.65□□□□□ -0.38
SNHG1-221ENST00000544983 KCNJ12Q14500 433 aa12.65□□□□□ -0.38
SNHG1-221ENST00000544983 MAN2A1Q16706 1144 aa12.65□□□□□ -0.38
SNHG1-221ENST00000544983 TDRD10Q5VZ19 366 aaKnown RBP12.65□□□□□ -0.38
SNHG1-221ENST00000544983 LMBRD2Q68DH5 695 aaPredicted RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms