RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	EMC2	Q15006	297 aa		13.86	□□□□□ -0.19
CPSF7-223	ENST00000544669	AADACL2	Q6P093	401 aa		13.86	□□□□□ -0.19
CPSF7-223	ENST00000544669	CCDC25	Q86WR0	208 aa		13.86	□□□□□ -0.19
CPSF7-223	ENST00000544669	ZDHHC14	Q8IZN3	488 aa		13.86	□□□□□ -0.19
CPSF7-223	ENST00000544669	FEZF2	Q8TBJ5	459 aa		13.86	□□□□□ -0.19
CPSF7-223	ENST00000544669	BSND	Q8WZ55	320 aa		13.86	□□□□□ -0.19
CPSF7-223	ENST00000544669	ARHGEF2	Q92974	986 aa	Known RBP	13.86	□□□□□ -0.19
CPSF7-223	ENST00000544669	DDX27	Q96GQ7	796 aa	Known RBP	13.86	□□□□□ -0.19
CPSF7-223	ENST00000544669	MPHOSPH6	Q99547	160 aa	Known RBP	13.86	□□□□□ -0.19
CPSF7-223	ENST00000544669	ZNF302	Q9NR11	478 aa		13.86	□□□□□ -0.19
CPSF7-223	ENST00000544669	SENP1	Q9P0U3	644 aa		13.86	□□□□□ -0.19
CPSF7-223	ENST00000544669	FBXO40	Q9UH90	709 aa		13.86	□□□□□ -0.19
CPSF7-223	ENST00000544669	LGALS13	Q9UHV8	139 aa		13.86	□□□□□ -0.19
CPSF7-223	ENST00000544669	DRG1	Q9Y295	367 aa	Known RBP	13.86	□□□□□ -0.19
CPSF7-223	ENST00000544669	CEP83	Q9Y592	693 aa		13.86	□□□□□ -0.19
CPSF7-223	ENST00000544669	PCDHB4	Q9Y5E5	795 aa		13.86	□□□□□ -0.19
CPSF7-223	ENST00000544669	MAFB	Q9Y5Q3	323 aa	Predicted RBP	13.86	□□□□□ -0.19
CPSF7-223	ENST00000544669	MROH7	Q68CQ1	1323 aa		13.86	□□□□□ -0.19
CPSF7-223	ENST00000544669	DCDC2C	A8MYV0	355 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	ZNF862	O60290	1169 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	RASSF9	O75901	435 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	SUN1	O94901	812 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	VIM	P08670	466 aa	Known RBP	13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	FGFR4	P22455	802 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	GNA15	P30679	374 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	SLC8A1	P32418	973 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	CNGA2	Q16280	664 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	FAM160B1	Q5W0V3	765 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	CCDC91	Q7Z6B0	441 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	PCGF5	Q86SE9	256 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	ZSWIM2	Q8NEG5	633 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	ATG4C	Q96DT6	458 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	SGSM3	Q96HU1	749 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	OSBPL8	Q9BZF1	889 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	PHACTR1	Q9C0D0	580 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	XPNPEP1	Q9NQW7	623 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	NKIRAS1	Q9NYS0	192 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	RBAK	Q9NYW8	714 aa	Predicted RBP	13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	EFR3B	Q9Y2G0	817 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	OAT	P04181	439 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	CLTA	P09496	248 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	DPEP1	P16444	411 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	PTPN7	P35236	360 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	ARL2	P36404	184 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	KCNJ1	P48048	391 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	SLC18A1	P54219	525 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	KLF1	Q13351	362 aa	Predicted RBP	13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	PIGH	Q14442	188 aa	Predicted RBP	13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	APOBEC3F	Q8IUX4	373 aa	Known RBP	13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	REPS2	Q8NFH8	660 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	C1orf54	Q8WWF1	131 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	BTBD6	Q96KE9	485 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	FAM167A	Q96KS9	214 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	MSTO1	Q9BUK6	570 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	OSBPL7	Q9BZF2	842 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	DHX33	Q9H6R0	707 aa	Known RBP	13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	CYP39A1	Q9NYL5	469 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	STRIP2	Q9ULQ0	834 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669	PPP2R3B	Q9Y5P8	575 aa		13.85	□□□□□ -0.19
CPSF7-223	ENST00000544669		A0A0B4J269	797 aa		13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	TMEM150B	A6NC51	233 aa		13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	TLR3	O15455	904 aa	Known RBP	13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	ACO1	P21399	889 aa	Known RBP	13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	POLR2B	P30876	1174 aa	Known RBP	13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	SCTR	P47872	440 aa		13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	ITGA8	P53708	1063 aa		13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	NOMO3	P69849	1222 aa		13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	IFI35	P80217	286 aa	Predicted RBP	13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	MAMLD1	Q13495	774 aa		13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	RASA2	Q15283	850 aa		13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	SNCB	Q16143	134 aa		13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	EXOC3L1	Q86VI1	746 aa		13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	WDR49	Q8IV35	697 aa		13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	MDM1	Q8TC05	714 aa		13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	TCP11	Q8WWU5	503 aa		13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	KAT2B	Q92831	832 aa		13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	PRMT1	Q99873	361 aa	Known RBP	13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	JPH2	Q9BR39	696 aa	Predicted RBP	13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	KIFC3	Q9BVG8	833 aa		13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	CCDC113	Q9H0I3	377 aa		13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	ADAM7	Q9H2U9	754 aa		13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	TOPORS	Q9NS56	1045 aa	Predicted RBP	13.84	□□□□□ -0.19
CPSF7-223	ENST00000544669	TCRBV7S2A1N4T	A0A589	114 aa		13.83	□□□□□ -0.2
CPSF7-223	ENST00000544669	TGFB3	P10600	412 aa		13.83	□□□□□ -0.2
CPSF7-223	ENST00000544669	IVD	P26440	423 aa		13.83	□□□□□ -0.2
CPSF7-223	ENST00000544669	NEDD9	Q14511	834 aa		13.83	□□□□□ -0.2
CPSF7-223	ENST00000544669	QPCT	Q16769	361 aa		13.83	□□□□□ -0.2
CPSF7-223	ENST00000544669	SGSM1	Q2NKQ1	1148 aa		13.83	□□□□□ -0.2
CPSF7-223	ENST00000544669	MTERF2	Q49AM1	385 aa		13.83	□□□□□ -0.2
CPSF7-223	ENST00000544669	TDRD10	Q5VZ19	366 aa	Known RBP	13.83	□□□□□ -0.2
CPSF7-223	ENST00000544669	FBXW10	Q5XX13	1052 aa		13.83	□□□□□ -0.2
CPSF7-223	ENST00000544669	CATSPERG	Q6ZRH7	1159 aa		13.83	□□□□□ -0.2
CPSF7-223	ENST00000544669	GSTA5	Q7RTV2	222 aa		13.83	□□□□□ -0.2
CPSF7-223	ENST00000544669	CCDC60	Q8IWA6	550 aa	Predicted RBP	13.83	□□□□□ -0.2
CPSF7-223	ENST00000544669	ZCCHC9	Q8N567	271 aa	Known RBP	13.83	□□□□□ -0.2
CPSF7-223	ENST00000544669	TTC13	Q8NBP0	860 aa		13.83	□□□□□ -0.2
CPSF7-223	ENST00000544669	TMEM35B	Q8NCS4	154 aa		13.83	□□□□□ -0.2
CPSF7-223	ENST00000544669	EPS8L3	Q8TE67	593 aa	Known RBP	13.83	□□□□□ -0.2
CPSF7-223	ENST00000544669	CPA5	Q8WXQ8	436 aa		13.83	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms