RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	TAF1C	Q15572	869 aa	Predicted RBP	16	■□□□□ 0.15
CHFR-223	ENST00000544268	QPCT	Q16769	361 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	HSDL1	Q3SXM5	330 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	C2CD6	Q53TS8	623 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	CAPRIN2	Q6IMN6	1127 aa	Known RBP	16	■□□□□ 0.15
CHFR-223	ENST00000544268	PLEKHH3	Q7Z736	793 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	PPM1K	Q8N3J5	372 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	CCHCR1	Q8TD31	782 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	WHAMM	Q8TF30	809 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	ATP8B4	Q8TF62	1192 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	TCP11	Q8WWU5	503 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	C18orf8	Q96DM3	657 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	PI4K2A	Q9BTU6	479 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	CTTNBP2NL	Q9P2B4	639 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	C15orf41	Q9Y2V0	281 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	TLL2	Q9Y6L7	1015 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	ARID2	Q68CP9	1835 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	GOLGA6L10	A6NI86	522 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	FAM155A	B1AL88	458 aa	Predicted RBP	16	■□□□□ 0.15
CHFR-223	ENST00000544268	MME	P08473	750 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	TCF7	P36402	384 aa	Predicted RBP	16	■□□□□ 0.15
CHFR-223	ENST00000544268	ZNF844	Q08AG5	666 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	BYSL	Q13895	437 aa	Known RBP	16	■□□□□ 0.15
CHFR-223	ENST00000544268	XKR3	Q5GH77	459 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	CELF3	Q5SZQ8	465 aa	Known RBP	16	■□□□□ 0.15
CHFR-223	ENST00000544268	STXBP4	Q6ZWJ1	553 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	DPP9	Q86TI2	863 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	SLC9A9	Q8IVB4	645 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	TBC1D31	Q96DN5	1066 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	STAMBPL1	Q96FJ0	436 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	CYP26B1	Q9NR63	512 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	BAIAP2L1	Q9UHR4	511 aa		16	■□□□□ 0.15
CHFR-223	ENST00000544268	BHMG1	C9JSJ3	638 aa	Predicted RBP	15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	TXN	P10599	105 aa	Known RBP	15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	MAPK4	P31152	587 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	CTNNA1	P35221	906 aa	Known RBP	15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	MYO1E	Q12965	1108 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	MESD	Q14696	234 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	MTERF2	Q49AM1	385 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	LMBRD2	Q68DH5	695 aa	Predicted RBP	15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	LLGL2	Q6P1M3	1020 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	LRIG3	Q6UXM1	1119 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	IFNL1	Q8IU54	200 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	SEPT1	Q8WYJ6	367 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	THOC1	Q96FV9	657 aa	Known RBP	15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	ACCS	Q96QU6	501 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	TIPIN	Q9BVW5	301 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	SLC12A6	Q9UHW9	1150 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	INTU	Q9ULD6	942 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	ABT1	Q9ULW3	272 aa	Known RBP	15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	DOCK3	Q8IZD9	2030 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	UBE4B	O95155	1302 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	OAT	P04181	439 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	PECAM1	P16284	738 aa	Predicted RBP	15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	TMOD1	P28289	359 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	SYCE1	Q8N0S2	351 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	XXYLT1	Q8NBI6	393 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	GPR20	Q99678	358 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	ADGRA3	Q8IWK6	1321 aa		15.99	■□□□□ 0.15
CHFR-223	ENST00000544268	ANKRD62	A6NC57	917 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	SSTR3	P32745	418 aa	Predicted RBP	15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	PEX19	P40855	299 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	STAT5B	P51692	787 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	TTLL4	Q14679	1199 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	GKAP1	Q5VSY0	366 aa	Predicted RBP	15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	DAB2IP	Q5VWQ8	1189 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	HIBCH	Q6NVY1	386 aa	Predicted RBP	15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	TAPT1	Q6NXT6	567 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	SLC39A4	Q6P5W5	647 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	INTS8	Q75QN2	995 aa	Known RBP	15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	EPS8L1	Q8TE68	723 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	XPNPEP1	Q9NQW7	623 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	PDLIM7	Q9NR12	457 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	CORO1C	Q9ULV4	474 aa	Predicted RBP	15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	CENPF	P49454	3210 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	NOP56	O00567	594 aa	Known RBP	15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	SMNDC1	O75940	238 aa	Known RBP eCLIP	15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	ANP32D	O95626	131 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	PAEP	P09466	180 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	FAM163B	P0C2L3	166 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	NPTX2	P47972	431 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	MXI1	P50539	228 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	DHX9	Q08211	1270 aa	Known RBP	15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	SNRNP35	Q16560	246 aa	Known RBP	15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	GJC2	Q5T442	439 aa	Predicted RBP	15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	SCARA3	Q6AZY7	606 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	TMC3	Q7Z5M5	1100 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	ZNF467	Q7Z7K2	595 aa	Predicted RBP	15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	TRIM50	Q86XT4	487 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	TAS1R2	Q8TE23	839 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	PARD3B	Q8TEW8	1205 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	MAML3	Q96JK9	1138 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	SPATA33	Q96N06	139 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	ZIC5	Q96T25	663 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	TRIM7	Q9C029	511 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	CPSF2	Q9P2I0	782 aa	Known RBP	15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	CNOT8	Q9UFF9	292 aa	Known RBP	15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	ATP8A1	Q9Y2Q0	1164 aa		15.98	■□□□□ 0.15
CHFR-223	ENST00000544268	SNX24	Q9Y343	169 aa		15.98	■□□□□ 0.15

Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms