RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	RBSN	Q9H1K0	784 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	CERS4	Q9HA82	394 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	SPG21	Q9NZD8	308 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	RWDD3	Q9Y3V2	267 aa		10.95	□□□□□ -0.66
CPSF7-221	ENST00000543545	SI	P14410	1827 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	PPEF2	O14830	753 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	CST3	P01034	146 aa	Predicted RBP	10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	HLA-DRA	P01903	254 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	DNAJB2	P25686	324 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	PPM1A	P35813	382 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	PNPLA4	P41247	253 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	TAF6	P49848	677 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	MYL6	P60660	151 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	KRT17	Q04695	432 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	UPP1	Q16831	310 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	SGSM1	Q2NKQ1	1148 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	ZNF699	Q32M78	642 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	LRIT3	Q3SXY7	679 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	CBWD6	Q4V339	395 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	CBWD3	Q5JTY5	395 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	CBWD5	Q5RIA9	395 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	TAS1R2	Q8TE23	839 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	HPDL	Q96IR7	371 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	PCMTD1	Q96MG8	357 aa	Predicted RBP	10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	ZNF560	Q96MR9	790 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	C17orf80	Q9BSJ5	609 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	IMPG2	Q9BZV3	1241 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	HSD3B7	Q9H2F3	369 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	NDST4	Q9H3R1	872 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	LIMA1	Q9UHB6	759 aa	Known RBP	10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	PUF60	Q9UHX1	559 aa	Known RBP	10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	SIX4	Q9UIU6	781 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	TTC3	P53804	2025 aa		10.94	□□□□□ -0.66
CPSF7-221	ENST00000543545	LTBP2	Q14767	1821 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	ANO9	A1A5B4	782 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545		F8W810	466 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	PIR	O00625	290 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	P4HA2	O15460	535 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	TRAPPC3	O43617	180 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	ARHGEF15	O94989	841 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	KIF4A	O95239	1232 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	FANCC	Q00597	558 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	TAP1	Q03518	808 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	UBXN1	Q04323	297 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	LRMP	Q12912	555 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	SV2C	Q496J9	727 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	EPC2	Q52LR7	807 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	SCARA3	Q6AZY7	606 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	GBP6	Q6ZN66	633 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	SLC39A11	Q8N1S5	342 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	LRRC52	Q8N7C0	313 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	KLHL23	Q8NBE8	558 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	FBXL13	Q8NEE6	735 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	ARNTL2	Q8WYA1	636 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	CLP1	Q92989	425 aa	Known RBP	10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	IGSF21	Q96ID5	467 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	SAMD11	Q96NU1	681 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	MMS19	Q96T76	1030 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	CRACR2A	Q9BSW2	395 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	PI4K2A	Q9BTU6	479 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	RAB20	Q9NX57	234 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	NXF1	Q9UBU9	619 aa	Known RBP	10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	ADAM28	Q9UKQ2	775 aa		10.93	□□□□□ -0.66
CPSF7-221	ENST00000543545	SF3B1	O75533	1304 aa	Known RBP eCLIP	10.92	□□□□□ -0.66	7e-6	■■■■■ 28.7
CPSF7-221	ENST00000543545	LRRC10B	A6NIK2	292 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	KPNA7	A9QM74	516 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545		I3L4J1	428 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	HUS1	O60921	280 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	FGF18	O76093	207 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	CSPG5	O95196	566 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	VNN1	O95497	513 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	ITGB1	P05556	798 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	RB1	P06400	928 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	TPM3	P06753	285 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	P4HA1	P13674	534 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	PAX3	P23760	479 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	IGFBP6	P24592	240 aa	Predicted RBP	10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	ATIC	P31939	592 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	CA8	P35219	290 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	BRCC3	P46736	316 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	UBASH3A	P57075	661 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	LILRA4	P59901	499 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	MCCD1	P59942	119 aa	Predicted RBP	10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	ERVK-21	P61565	698 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	TNNC1	P63316	161 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	ELAVL2	Q12926	359 aa	Known RBP	10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	EXOC3L4	Q17RC7	722 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	WDR72	Q3MJ13	1102 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	ZNF667	Q5HYK9	610 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	MIIP	Q5JXC2	388 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	FAM171A1	Q5VUB5	890 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	KIAA1841	Q6NSI8	718 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	FUT10	Q6P4F1	479 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	C15orf39	Q6ZRI6	1047 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	TMEM173	Q86WV6	379 aa	Predicted RBP	10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	CEP57	Q86XR8	500 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	EHBP1	Q8NDI1	1231 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	FBXO22	Q8NEZ5	403 aa		10.92	□□□□□ -0.66
CPSF7-221	ENST00000543545	MICAL1	Q8TDZ2	1067 aa		10.92	□□□□□ -0.66

Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms