RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PHACTR2O75167 634 aa18.47■□□□□ 0.55
LIG1-204ENST00000542460 KRT19P08727 400 aa18.47■□□□□ 0.55
LIG1-204ENST00000542460 KCNH2Q12809 1159 aa18.47■□□□□ 0.55
LIG1-204ENST00000542460 EPC2Q52LR7 807 aa18.47■□□□□ 0.55
LIG1-204ENST00000542460 TMEM130Q8N3G9 435 aa18.47■□□□□ 0.55
LIG1-204ENST00000542460 ANKRD20A12PQ8NF67 263 aa18.47■□□□□ 0.55
LIG1-204ENST00000542460 CXorf38Q8TB03 319 aa18.47■□□□□ 0.55
LIG1-204ENST00000542460 IGSF21Q96ID5 467 aa18.47■□□□□ 0.55
LIG1-204ENST00000542460 TUBGCP2Q9BSJ2 902 aa18.47■□□□□ 0.55
LIG1-204ENST00000542460 MMRN2Q9H8L6 949 aa18.47■□□□□ 0.55
LIG1-204ENST00000542460 SIX4Q9UIU6 781 aa18.47■□□□□ 0.55
LIG1-204ENST00000542460 AGAP1Q9UPQ3 857 aa18.47■□□□□ 0.55
LIG1-204ENST00000542460 TADA2AO75478 443 aa18.46■□□□□ 0.55
LIG1-204ENST00000542460 KIF4AO95239 1232 aa18.46■□□□□ 0.55
LIG1-204ENST00000542460 AFPP02771 609 aaKnown RBP18.46■□□□□ 0.55
LIG1-204ENST00000542460 PAX3P23760 479 aa18.46■□□□□ 0.55
LIG1-204ENST00000542460 POLR2BP30876 1174 aaKnown RBP18.46■□□□□ 0.55
LIG1-204ENST00000542460 MXI1P50539 228 aa18.46■□□□□ 0.55
LIG1-204ENST00000542460 TRPC3Q13507 836 aa18.46■□□□□ 0.55
LIG1-204ENST00000542460 MAN2A1Q16706 1144 aa18.46■□□□□ 0.55
LIG1-204ENST00000542460 Q7L0L9 218 aa18.46■□□□□ 0.55
LIG1-204ENST00000542460 SPRED2Q7Z698 418 aa18.46■□□□□ 0.55
LIG1-204ENST00000542460 DEFB123Q8N688 67 aa18.46■□□□□ 0.55
LIG1-204ENST00000542460 LRRC52Q8N7C0 313 aa18.46■□□□□ 0.55
LIG1-204ENST00000542460 TMEM169Q96HH4 297 aa18.46■□□□□ 0.55
LIG1-204ENST00000542460 MARCH5Q9NX47 278 aa18.46■□□□□ 0.55
LIG1-204ENST00000542460 ADAM28Q9UKQ2 775 aa18.46■□□□□ 0.55
LIG1-204ENST00000542460 MTUS1Q9ULD2 1270 aa18.46■□□□□ 0.55
LIG1-204ENST00000542460 ANK1P16157 1881 aa18.45■□□□□ 0.54
LIG1-204ENST00000542460 PPEF2O14830 753 aa18.45■□□□□ 0.54
LIG1-204ENST00000542460 PMM2O15305 246 aa18.45■□□□□ 0.54
LIG1-204ENST00000542460 N4BP1O75113 896 aaKnown RBP18.45■□□□□ 0.54
LIG1-204ENST00000542460 FGF18O76093 207 aa18.45■□□□□ 0.54
LIG1-204ENST00000542460 CST3P01034 146 aaPredicted RBP18.45■□□□□ 0.54
LIG1-204ENST00000542460 PRKCSHP14314 528 aaPredicted RBP18.45■□□□□ 0.54
LIG1-204ENST00000542460 PNPLA4P41247 253 aa18.45■□□□□ 0.54
LIG1-204ENST00000542460 FMO5P49326 533 aa18.45■□□□□ 0.54
LIG1-204ENST00000542460 KRT17Q04695 432 aa18.45■□□□□ 0.54
LIG1-204ENST00000542460 NCOA4Q13772 614 aa18.45■□□□□ 0.54
LIG1-204ENST00000542460 CBWD6Q4V339 395 aa18.45■□□□□ 0.54
LIG1-204ENST00000542460 CBWD3Q5JTY5 395 aa18.45■□□□□ 0.54
LIG1-204ENST00000542460 CBWD5Q5RIA9 395 aa18.45■□□□□ 0.54
LIG1-204ENST00000542460 TMEM173Q86WV6 379 aaPredicted RBP18.45■□□□□ 0.54
LIG1-204ENST00000542460 KLHL23Q8NBE8 558 aa18.45■□□□□ 0.54
LIG1-204ENST00000542460 C3orf58Q8NDZ4 430 aa18.45■□□□□ 0.54
LIG1-204ENST00000542460 ZNF560Q96MR9 790 aa18.45■□□□□ 0.54
LIG1-204ENST00000542460 C11orf84Q9BUA3 381 aaPredicted RBP18.45■□□□□ 0.54
LIG1-204ENST00000542460 NUB1Q9Y5A7 615 aa18.45■□□□□ 0.54
LIG1-204ENST00000542460 TDRD15B5MCY1 1934 aaKnown RBP18.45■□□□□ 0.54
LIG1-204ENST00000542460 COL6A3P12111 3177 aa18.45■□□□□ 0.54
LIG1-204ENST00000542460 TMEM265A0A087WTH1 108 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 LRRC10BA6NIK2 292 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 F8W810 466 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 P4HA2O15460 535 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 TRAPPC3O43617 180 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 VNN1O95497 513 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 ITGB1P05556 798 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 TAF6P49848 677 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 LILRA4P59901 499 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 PLCB3Q01970 1234 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 CETN1Q12798 172 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 MYO1EQ12965 1108 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 KRT31Q15323 416 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 VWA3BQ502W6 1294 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 CD300LGQ6UXG3 332 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 FBXL13Q8NEE6 735 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 FBXO22Q8NEZ5 403 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 HASPINQ8TF76 798 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 BCL7CQ8WUZ0 217 aaPredicted RBP18.44■□□□□ 0.54
LIG1-204ENST00000542460 ZNF576Q9H609 170 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 STK39Q9UEW8 545 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 LIMA1Q9UHB6 759 aaKnown RBP18.44■□□□□ 0.54
LIG1-204ENST00000542460 TRIP11Q15643 1979 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 TPM2P07951 284 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 ATP1A3P13637 1013 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 IGFBP6P24592 240 aaPredicted RBP18.44■□□□□ 0.54
LIG1-204ENST00000542460 ATICP31939 592 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 SV2CQ496J9 727 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 SCARA3Q6AZY7 606 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 RNF214Q8ND24 703 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 TAS1R2Q8TE23 839 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 ARNTL2Q8WYA1 636 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 HPDLQ96IR7 371 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 NDST4Q9H3R1 872 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 CERS4Q9HA82 394 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 PUF60Q9UHX1 559 aaKnown RBP18.44■□□□□ 0.54
LIG1-204ENST00000542460 COQ4Q9Y3A0 265 aa18.44■□□□□ 0.54
LIG1-204ENST00000542460 PDCD11Q14690 1871 aaKnown RBP18.43■□□□□ 0.54
LIG1-204ENST00000542460 SF3B1O75533 1304 aaKnown RBP eCLIP18.43■□□□□ 0.543e-6■■■■■ 28.7
LIG1-204ENST00000542460 KPNA7A9QM74 516 aa18.43■□□□□ 0.54
LIG1-204ENST00000542460 H3BNC9 293 aa18.43■□□□□ 0.54
LIG1-204ENST00000542460 HLA-DRAP01903 254 aa18.43■□□□□ 0.54
LIG1-204ENST00000542460 PIK3CAP42336 1068 aa18.43■□□□□ 0.54
LIG1-204ENST00000542460 MYL6P60660 151 aa18.43■□□□□ 0.54
LIG1-204ENST00000542460 MYL7Q01449 175 aa18.43■□□□□ 0.54
LIG1-204ENST00000542460 ELAVL2Q12926 359 aaKnown RBP18.43■□□□□ 0.54
LIG1-204ENST00000542460 SGSM1Q2NKQ1 1148 aa18.43■□□□□ 0.54
LIG1-204ENST00000542460 MIIPQ5JXC2 388 aa18.43■□□□□ 0.54
LIG1-204ENST00000542460 FUT10Q6P4F1 479 aa18.43■□□□□ 0.54
LIG1-204ENST00000542460 DDX53Q86TM3 631 aaKnown RBP18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms