RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 ZMAT2Q96NC0 199 aaKnown RBP16.88■□□□□ 0.29
RTN3-211ENST00000542238 TARS2Q9BW92 718 aaKnown RBP16.88■□□□□ 0.29
RTN3-211ENST00000542238 NDRG2Q9UN36 371 aaKnown RBP16.88■□□□□ 0.29
RTN3-211ENST00000542238 LIMCH1Q9UPQ0 1083 aa16.88■□□□□ 0.29
RTN3-211ENST00000542238 PDCD11Q14690 1871 aaKnown RBP16.88■□□□□ 0.29
RTN3-211ENST00000542238 TICRRQ7Z2Z1 1910 aa16.88■□□□□ 0.29
RTN3-211ENST00000542238 PRR5-ARHGAP8B1AHC4 643 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 HIP1RO75146 1068 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 PSMC3P17980 439 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 FCARP24071 287 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 MARCKSP29966 332 aaPredicted RBP16.87■□□□□ 0.29
RTN3-211ENST00000542238 ARHGAP8P85298 464 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 LMNB2Q03252 620 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 ST3GAL1Q11201 340 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 FZD5Q13467 585 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 KRT79Q5XKE5 535 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 POTEHQ6S545 545 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 CCDC83Q8IWF9 413 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 LEMD2Q8NC56 503 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 FBXO18Q8NFZ0 1043 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 SMARCD2Q92925 531 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 SUSD3Q96L08 255 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 ASB16Q96NS5 453 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 LLPHQ9BRT6 129 aaKnown RBP16.87■□□□□ 0.29
RTN3-211ENST00000542238 IER2Q9BTL4 223 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 C17orf75Q9HAS0 396 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 TRPV5Q9NQA5 729 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 CNTN3Q9P232 1028 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 ARHGAP28Q9P2N2 729 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 AFF4Q9UHB7 1163 aaKnown RBP16.87■□□□□ 0.29
RTN3-211ENST00000542238 GMEB2Q9UKD1 530 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 RAB23Q9ULC3 237 aa16.87■□□□□ 0.29
RTN3-211ENST00000542238 E9PMD0 336 aa16.86■□□□□ 0.29
RTN3-211ENST00000542238 HARSP12081 509 aaKnown RBP16.86■□□□□ 0.29
RTN3-211ENST00000542238 CPB1P15086 417 aa16.86■□□□□ 0.29
RTN3-211ENST00000542238 PROZP22891 400 aa16.86■□□□□ 0.29
RTN3-211ENST00000542238 GDI1P31150 447 aa16.86■□□□□ 0.29
RTN3-211ENST00000542238 STRN3Q13033 797 aa16.86■□□□□ 0.29
RTN3-211ENST00000542238 C4orf32Q8N8J7 132 aa16.86■□□□□ 0.29
RTN3-211ENST00000542238 IGSF22Q8N9C0 903 aa16.86■□□□□ 0.29
RTN3-211ENST00000542238 FAM184AQ8NB25 1140 aa16.86■□□□□ 0.29
RTN3-211ENST00000542238 DEPDC1BQ8WUY9 529 aa16.86■□□□□ 0.29
RTN3-211ENST00000542238 FAM3CQ92520 227 aa16.86■□□□□ 0.29
RTN3-211ENST00000542238 C18orf25Q96B23 403 aaPredicted RBP16.86■□□□□ 0.29
RTN3-211ENST00000542238 TBC1D32Q96NH3 1257 aa16.86■□□□□ 0.29
RTN3-211ENST00000542238 CHRDQ9H2X0 955 aa16.86■□□□□ 0.29
RTN3-211ENST00000542238 ZNF334Q9HCZ1 680 aaPredicted RBP16.86■□□□□ 0.29
RTN3-211ENST00000542238 ASAH2Q9NR71 780 aa16.86■□□□□ 0.29
RTN3-211ENST00000542238 KCNG1Q9UIX4 513 aa16.86■□□□□ 0.29
RTN3-211ENST00000542238 USP18Q9UMW8 372 aa16.86■□□□□ 0.29
RTN3-211ENST00000542238 SHISA7A6NL88 538 aa16.85■□□□□ 0.29
RTN3-211ENST00000542238 MYL4P12829 197 aa16.85■□□□□ 0.29
RTN3-211ENST00000542238 CCR2P41597 374 aa16.85■□□□□ 0.29
RTN3-211ENST00000542238 HMGN5P82970 282 aaKnown RBP16.85■□□□□ 0.29
RTN3-211ENST00000542238 TWF1Q12792 350 aa16.85■□□□□ 0.29
RTN3-211ENST00000542238 PTGDRQ13258 359 aa16.85■□□□□ 0.29
RTN3-211ENST00000542238 ERICH6BQ5W0A0 696 aa16.85■□□□□ 0.29
RTN3-211ENST00000542238 VITQ6UXI7 678 aa16.85■□□□□ 0.29
RTN3-211ENST00000542238 MAMSTRQ6ZN01 415 aa16.85■□□□□ 0.29
RTN3-211ENST00000542238 TAS1R3Q7RTX0 852 aa16.85■□□□□ 0.29
RTN3-211ENST00000542238 MAP4K3Q8IVH8 894 aa16.85■□□□□ 0.29
RTN3-211ENST00000542238 HS6ST3Q8IZP7 471 aa16.85■□□□□ 0.29
RTN3-211ENST00000542238 DAW1Q8N136 415 aa16.85■□□□□ 0.29
RTN3-211ENST00000542238 DDX12PQ92771 950 aa16.85■□□□□ 0.29
RTN3-211ENST00000542238 TIPINQ9BVW5 301 aa16.85■□□□□ 0.29
RTN3-211ENST00000542238 GPR88Q9GZN0 384 aa16.85■□□□□ 0.29
RTN3-211ENST00000542238 LMAN1LQ9HAT1 526 aa16.85■□□□□ 0.29
RTN3-211ENST00000542238 ANKFY1Q9P2R3 1169 aa16.85■□□□□ 0.29
RTN3-211ENST00000542238 CDV3Q9UKY7 258 aaKnown RBP16.85■□□□□ 0.29
RTN3-211ENST00000542238 PIAS3Q9Y6X2 628 aa16.85■□□□□ 0.29
RTN3-211ENST00000542238 SPTBN2O15020 2390 aa16.84■□□□□ 0.29
RTN3-211ENST00000542238 LAD1O00515 517 aa16.84■□□□□ 0.29
RTN3-211ENST00000542238 ZNF263O14978 683 aa16.84■□□□□ 0.29
RTN3-211ENST00000542238 SLC16A4O15374 487 aa16.84■□□□□ 0.29
RTN3-211ENST00000542238 TOM1L1O75674 476 aa16.84■□□□□ 0.29
RTN3-211ENST00000542238 CCR3P51677 355 aa16.84■□□□□ 0.29
RTN3-211ENST00000542238 SMTNP53814 917 aa16.84■□□□□ 0.29
RTN3-211ENST00000542238 NBR1Q14596 966 aa16.84■□□□□ 0.29
RTN3-211ENST00000542238 NOLC1Q14978 699 aaKnown RBP eCLIP16.84■□□□□ 0.29
RTN3-211ENST00000542238 RINT1Q6NUQ1 792 aa16.84■□□□□ 0.29
RTN3-211ENST00000542238 ZSCAN18Q8TBC5 510 aaPredicted RBP16.84■□□□□ 0.29
RTN3-211ENST00000542238 E2F7Q96AV8 911 aa16.84■□□□□ 0.29
RTN3-211ENST00000542238 ZSWIM3Q96MP5 696 aa16.84■□□□□ 0.29
RTN3-211ENST00000542238 RUSC1Q9BVN2 902 aa16.84■□□□□ 0.29
RTN3-211ENST00000542238 OXCT2Q9BYC2 517 aaPredicted RBP16.84■□□□□ 0.29
RTN3-211ENST00000542238 SLITRK6Q9H5Y7 841 aa16.84■□□□□ 0.29
RTN3-211ENST00000542238 TRPV4Q9HBA0 871 aa16.84■□□□□ 0.29
RTN3-211ENST00000542238 CEP72Q9P209 647 aa16.84■□□□□ 0.29
RTN3-211ENST00000542238 PCDHB8Q9UN66 801 aa16.84■□□□□ 0.29
RTN3-211ENST00000542238 COL4A2P08572 1712 aa16.84■□□□□ 0.29
RTN3-211ENST00000542238 ABLIM1O14639 778 aa16.83■□□□□ 0.28
RTN3-211ENST00000542238 NEFLP07196 543 aa16.83■□□□□ 0.28
RTN3-211ENST00000542238 VIPR2P41587 438 aa16.83■□□□□ 0.28
RTN3-211ENST00000542238 MATR3P43243 847 aaKnown RBP eCLIP16.83■□□□□ 0.281e-6■■□□□ 13.3
RTN3-211ENST00000542238 ATXN1P54253 815 aaKnown RBP16.83■□□□□ 0.28
RTN3-211ENST00000542238 EPHA5P54756 1037 aa16.83■□□□□ 0.28
RTN3-211ENST00000542238 YWHAHQ04917 246 aaPredicted RBP16.83■□□□□ 0.28
RTN3-211ENST00000542238 PLD1Q13393 1074 aa16.83■□□□□ 0.28
RTN3-211ENST00000542238 SLC10A6Q3KNW5 377 aa16.83■□□□□ 0.28
RTN3-211ENST00000542238 RNF19BQ6ZMZ0 732 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms