RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.87□□□□□ -0.03
USP3-204ENST00000540797 RASA4BC9J798 803 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 KCNN4O15554 427 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 RASA4O43374 803 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 ATP9BO43861 1147 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 VGLL4Q14135 290 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 CCDC38Q502W7 563 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 EFHBQ8N7U6 833 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 NDFIP2Q9NV92 336 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 AK9Q5TCS8 1911 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 HMGB1P1B2RPK0 211 aaPredicted RBP14.87□□□□□ -0.03
USP3-204ENST00000540797 GSTA4O15217 222 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 MX2P20592 715 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 BRD2P25440 801 aaKnown RBP14.87□□□□□ -0.03
USP3-204ENST00000540797 TMPRSS15P98073 1019 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 POU5F1BQ06416 359 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 ARHGAP15Q53QZ3 475 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 SLC30A10Q6XR72 485 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 TRAPPC11Q7Z392 1133 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 MAML1Q92585 1016 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 HAUS8Q9BT25 410 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 SETD4Q9NVD3 440 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 PCDHB8Q9UN66 801 aa14.87□□□□□ -0.03
USP3-204ENST00000540797 TM4SF1P30408 202 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 CLCN6P51797 869 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 PMS2P54278 862 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 NR1I3Q14994 352 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 C10orf120Q5SQS8 335 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 TDRD10Q5VZ19 366 aaKnown RBP14.86□□□□□ -0.03
USP3-204ENST00000540797 FGD4Q96M96 766 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 MTG1Q9BT17 334 aaPredicted RBP14.86□□□□□ -0.03
USP3-204ENST00000540797 MROH1Q8NDA8 1641 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 KPNA7A9QM74 516 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 H7C4K7 107 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 PTPRAP18433 802 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 ANO4Q32M45 955 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 ZNF677Q86XU0 584 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 PGBD3Q8N328 593 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 A0A087WUV0 522 aaPredicted RBP14.86□□□□□ -0.03
USP3-204ENST00000540797 TRPA1O75762 1119 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 HARS2P49590 506 aaKnown RBP14.86□□□□□ -0.03
USP3-204ENST00000540797 PTPAQ15257 358 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 AMHR2Q16671 573 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 KLHDC7AQ5VTJ3 777 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 ULK4Q96C45 1275 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 PABPC5Q96DU9 382 aaKnown RBP14.86□□□□□ -0.03
USP3-204ENST00000540797 CPB2Q96IY4 423 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 YME1L1Q96TA2 773 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 ABHD16BQ9H3Z7 469 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 VTA1Q9NP79 307 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.86□□□□□ -0.03
USP3-204ENST00000540797 MAP3K7O43318 606 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 ATP1A1P05023 1023 aaKnown RBP14.86□□□□□ -0.03
USP3-204ENST00000540797 AKR1A1P14550 325 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 ALDH5A1P51649 535 aaPredicted RBP14.86□□□□□ -0.03
USP3-204ENST00000540797 ERVK-9P63128 1117 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 ERVK-24P63145 666 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 SMAD1Q15797 465 aaKnown RBP14.86□□□□□ -0.03
USP3-204ENST00000540797 C15orf52Q6ZUT6 534 aaKnown RBP14.86□□□□□ -0.03
USP3-204ENST00000540797 CRLF3Q8IUI8 442 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 TACO1Q9BSH4 297 aaKnown RBP14.86□□□□□ -0.03
USP3-204ENST00000540797 A0A087WZ62 844 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 C3orf70A6NLC5 250 aaPredicted RBP14.86□□□□□ -0.03
USP3-204ENST00000540797 HSPA8P11142 646 aaKnown RBP14.86□□□□□ -0.03
USP3-204ENST00000540797 COPS2P61201 443 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 NR1H3Q13133 447 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 SPARCL1Q14515 664 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 ELOA2Q8IYF1 753 aaPredicted RBP14.86□□□□□ -0.03
USP3-204ENST00000540797 USP33Q8TEY7 942 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 EGFL8Q99944 293 aa14.86□□□□□ -0.03
USP3-204ENST00000540797 FDXACB1Q9BRP7 624 aaPredicted RBP14.86□□□□□ -0.03
USP3-204ENST00000540797 PPP1R3GB7ZBB8 358 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 NCAM1P13591 858 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 CUL2Q13617 745 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 GIT2Q14161 759 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 NAB2Q15742 525 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 EPC2Q52LR7 807 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 ARHGAP18Q8N392 663 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 ATP11CQ8NB49 1132 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 ATL2Q8NHH9 583 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 ATP8B4Q8TF62 1192 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 ESYT3A0FGR9 886 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 INSRRP14616 1297 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 IL1RL1Q01638 556 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 IFT88Q13099 833 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 PPIL2Q13356 520 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 MUM1Q2TAK8 710 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 CBWD2Q8IUF1 395 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 VGLL2Q8N8G2 317 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 SHCBP1Q8NEM2 672 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 SH3KBP1Q96B97 665 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 L3MBTL3Q96JM7 780 aaPredicted RBP14.85□□□□□ -0.03
USP3-204ENST00000540797 ZBTB18Q99592 522 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 VCX3AQ9NNX9 186 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 EPS15L1Q9UBC2 864 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 TRIM17Q9Y577 477 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 DNAJC6O75061 913 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 ZC3H11AO75152 810 aaKnown RBP eCLIP14.85□□□□□ -0.03
USP3-204ENST00000540797 GPD1P21695 349 aa14.85□□□□□ -0.03
USP3-204ENST00000540797 FXR1P51114 621 aaKnown RBP eCLIP14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms