RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 MRPL58Q14197 206 aaKnown RBP12.56□□□□□ -0.4
RTN3-209ENST00000538995 PPM1LQ5SGD2 360 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 FOXD4L5Q5VV16 416 aaPredicted RBP12.56□□□□□ -0.4
RTN3-209ENST00000538995 SPATA1Q5VX52 437 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 ZNF280DQ6N043 979 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 SHC4Q6S5L8 630 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 HFE2Q6ZVN8 426 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 STXBP4Q6ZWJ1 553 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 BEST2Q8NFU1 509 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 FOXD4L4Q8WXT5 416 aaPredicted RBP12.56□□□□□ -0.4
RTN3-209ENST00000538995 POMGNT1Q8WZA1 660 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 PYM1Q9BRP8 204 aaKnown RBP12.56□□□□□ -0.4
RTN3-209ENST00000538995 PANK2Q9BZ23 570 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 TRIM9Q9C026 710 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 KCNH6Q9H252 994 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 PANK4Q9NVE7 773 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.56□□□□□ -0.4
RTN3-209ENST00000538995 EPS15L1Q9UBC2 864 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 MAFFQ9ULX9 164 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 PCDHB8Q9UN66 801 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 MYH15Q9Y2K3 1946 aa12.56□□□□□ -0.4
RTN3-209ENST00000538995 VWA8A3KMH1 1905 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 MUC6Q6W4X9 2439 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 IL18RAPO95256 599 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 GARTP22102 1010 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 ADSSP30520 456 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 ME1P48163 572 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 ROR1Q01973 937 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 PKP1Q13835 747 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 TMEM132DQ14C87 1099 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 TPGS2Q68CL5 300 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 RSPO2Q6UXX9 243 aaPredicted RBP12.55□□□□□ -0.4
RTN3-209ENST00000538995 NT5DC4Q86YG4 428 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 ZNF461Q8TAF7 563 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 SLC7A14Q8TBB6 771 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 NXPE3Q969Y0 559 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 DHX58Q96C10 678 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 ASIC4Q96FT7 647 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 TMEM206Q9H813 350 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 FAM13BQ9NYF5 915 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 IGSF9Q9P2J2 1179 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 LIMD1Q9UGP4 676 aa12.55□□□□□ -0.4
RTN3-209ENST00000538995 ZFP37Q9Y6Q3 630 aaPredicted RBP12.55□□□□□ -0.4
RTN3-209ENST00000538995 ARHGEF37A1IGU5 675 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 TISP43B9A030 160 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 KIAA0391O15091 583 aaKnown RBP12.54□□□□□ -0.4
RTN3-209ENST00000538995 N4BP1O75113 896 aaKnown RBP12.54□□□□□ -0.4
RTN3-209ENST00000538995 ABLIM3O94929 683 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 OAZ2O95190 189 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 LDHAP00338 332 aaKnown RBP12.54□□□□□ -0.4
RTN3-209ENST00000538995 NFICP08651 508 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 MYBP10242 640 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 ATF2P15336 505 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 TYMPP19971 482 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 ACOT2P49753 483 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 CASP5P51878 434 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 DNM1Q05193 864 aaKnown RBP12.54□□□□□ -0.4
RTN3-209ENST00000538995 SPAG1Q07617 926 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 KCNA1Q09470 495 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 CTXN3Q4LDR2 81 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 RESP18Q5W5W9 173 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 JADE1Q6IE81 842 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 TBC1D7Q9P0N9 293 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 FBXL5Q9UKA1 691 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 RCOR1Q9UKL0 485 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 PCDHA7Q9UN72 937 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 PDCD11Q14690 1871 aaKnown RBP12.54□□□□□ -0.4
RTN3-209ENST00000538995 TRIP11Q15643 1979 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 ZDBF2Q9HCK1 2354 aa12.54□□□□□ -0.4
RTN3-209ENST00000538995 C2orf16Q68DN1 1984 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 ANO9A1A5B4 782 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 WDR27A2RRH5 827 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 EIF3DO15371 548 aaKnown RBP eCLIP12.53□□□□□ -0.4
RTN3-209ENST00000538995 ASGR2P07307 311 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 FSHRP23945 695 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 GBP2P32456 591 aaPredicted RBP12.53□□□□□ -0.4
RTN3-209ENST00000538995 ELF1P32519 619 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 ASIC1P78348 528 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 YWHAHQ04917 246 aaPredicted RBP12.53□□□□□ -0.4
RTN3-209ENST00000538995 TDGQ13569 410 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 FOXD4L6Q3SYB3 417 aaPredicted RBP12.53□□□□□ -0.4
RTN3-209ENST00000538995 C9orf57Q5W0N0 161 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 CRELD2Q6UXH1 353 aaPredicted RBP12.53□□□□□ -0.4
RTN3-209ENST00000538995 FOXD4L3Q6VB84 417 aaPredicted RBP12.53□□□□□ -0.4
RTN3-209ENST00000538995 GET4Q7L5D6 327 aaPredicted RBP12.53□□□□□ -0.4
RTN3-209ENST00000538995 BRSK2Q8IWQ3 736 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 SUGP1Q8IWZ8 645 aaKnown RBP12.53□□□□□ -0.4
RTN3-209ENST00000538995 TCEAL8Q8IYN2 117 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 SYCP3Q8IZU3 236 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 FBXL6Q8N531 539 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 SPRYD3Q8NCJ5 442 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 PBXIP1Q96AQ6 731 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 FAM212AQ96EL1 285 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 MYADMQ96S97 322 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 C7orf25Q9BPX7 421 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 FGFBP2Q9BYJ0 223 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 KCNK12Q9HB15 430 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 AFF4Q9UHB7 1163 aaKnown RBP12.53□□□□□ -0.4
RTN3-209ENST00000538995 RAPGEFL1Q9UHV5 662 aa12.53□□□□□ -0.4
RTN3-209ENST00000538995 KCNH3Q9ULD8 1083 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms