RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 RAB26Q9ULW5 256 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 SATB2Q9UPW6 733 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 CEPT1Q9Y6K0 416 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 SQORQ9Y6N5 450 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 PRR36Q9H6K5 1346 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 CCDC88AQ3V6T2 1871 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 PVALEFA0A1B0GWK0 134 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 POTECB2RU33 542 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 EYA2O00167 538 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 CASQ2O14958 399 aaPredicted RBP13.12□□□□□ -0.31
USP3-203ENST00000538686 THAP12O43422 761 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 ITIH2P19823 946 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 ADD2P35612 726 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 AQP4P55087 323 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 NOP14P78316 857 aaKnown RBP13.12□□□□□ -0.31
USP3-203ENST00000538686 KCNC4Q03721 635 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 ARID5AQ03989 594 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 FOLH1Q04609 750 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 ZNF829Q3KNS6 432 aaPredicted RBP13.12□□□□□ -0.31
USP3-203ENST00000538686 C6orf183Q5T699 404 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 TMEM214Q6NUQ4 689 aaKnown RBP13.12□□□□□ -0.31
USP3-203ENST00000538686 MFSD6Q6ZSS7 791 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 ZNF571Q7Z3V5 609 aaPredicted RBP13.12□□□□□ -0.31
USP3-203ENST00000538686 RFFLQ8WZ73 363 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 C18orf8Q96DM3 657 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 OTUD5Q96G74 571 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 CYTH2Q99418 400 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 OLFM1Q99784 485 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 PPCSQ9HAB8 311 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 VTA1Q9NP79 307 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 HEY2Q9UBP5 337 aa13.12□□□□□ -0.31
USP3-203ENST00000538686 RTCBQ9Y3I0 505 aaKnown RBP13.12□□□□□ -0.31
USP3-203ENST00000538686 AFDNP55196 1824 aaKnown RBP13.11□□□□□ -0.31
USP3-203ENST00000538686 NCKAP5LQ9HCH0 1330 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 TTC34A8MYJ7 566 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 RSPH10B2B2RC85 870 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 TXNDC9O14530 226 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 MCF2LO15068 1137 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 PLSCR1O15162 318 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 NKRFO15226 690 aaKnown RBP eCLIP13.11□□□□□ -0.31
USP3-203ENST00000538686 CLASP2O75122 1294 aaKnown RBP13.11□□□□□ -0.31
USP3-203ENST00000538686 CAMTA2O94983 1202 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 TGDSO95455 350 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 ABHD2P08910 425 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 RSPH10BP0C881 870 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 KCNA2P16389 499 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 GNA11P29992 359 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 TBCCQ15814 346 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 AKAP4Q5JQC9 854 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 GJC2Q5T442 439 aaPredicted RBP13.11□□□□□ -0.31
USP3-203ENST00000538686 DCAF12L1Q5VU92 463 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 BPHLQ86WA6 291 aaPredicted RBP13.11□□□□□ -0.31
USP3-203ENST00000538686 ANKLE2Q86XL3 938 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 ULK2Q8IYT8 1036 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 UBL4BQ8N7F7 174 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 ENAHQ8N8S7 591 aaPredicted RBP13.11□□□□□ -0.31
USP3-203ENST00000538686 RIN3Q8TB24 985 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 CHPT1Q8WUD6 406 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 SHISA4Q96DD7 197 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 CEP63Q96MT8 703 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 KLC2Q9H0B6 622 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 GANQ9H2C0 597 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 TUT1Q9H6E5 874 aaKnown RBP13.11□□□□□ -0.31
USP3-203ENST00000538686 SSU72Q9NP77 194 aaKnown RBP13.11□□□□□ -0.31
USP3-203ENST00000538686 IGSF9Q9P2J2 1179 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 NEU2Q9Y3R4 380 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 NOX1Q9Y5S8 564 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 PFDN6O15212 129 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 ITM2AO43736 263 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 PDE8AO60658 829 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 DGKIO75912 1065 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 FCER1AP12319 257 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 NCKAP1LP55160 1127 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 MARSP56192 900 aaKnown RBP13.11□□□□□ -0.31
USP3-203ENST00000538686 FKBP3Q00688 224 aaKnown RBP13.11□□□□□ -0.31
USP3-203ENST00000538686 TMEM63BQ5T3F8 832 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 PIK3AP1Q6ZUJ8 805 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 SYDE1Q6ZW31 735 aaPredicted RBP13.11□□□□□ -0.31
USP3-203ENST00000538686 IRF2BP2Q7Z5L9 587 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 TRABD2AQ86V40 505 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 TDRPQ86YL5 185 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 GDPD5Q8WTR4 605 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 ZNF75CPQ92670 426 aaPredicted RBP13.11□□□□□ -0.31
USP3-203ENST00000538686 SLCO2A1Q92959 643 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 LBHD1Q9BQE6 289 aaPredicted RBP13.11□□□□□ -0.31
USP3-203ENST00000538686 C1orf21Q9H246 121 aa13.11□□□□□ -0.31
USP3-203ENST00000538686 RABL2AQ9UBK7 228 aaPredicted RBP13.11□□□□□ -0.31
USP3-203ENST00000538686 PCDH11YQ9BZA8 1340 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 C10orf71Q711Q0 1435 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 ATP5BP06576 529 aaKnown RBP13.1□□□□□ -0.31
USP3-203ENST00000538686 PABPC1P11940 636 aaKnown RBP13.1□□□□□ -0.31
USP3-203ENST00000538686 CALML3P27482 149 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 FDFT1P37268 417 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 GSSP48637 474 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 MXI1P50539 228 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 NR1D2Q14995 579 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 SPCS2Q15005 226 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 NPY5RQ15761 445 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 LMBR1LQ6UX01 489 aa13.1□□□□□ -0.31
USP3-203ENST00000538686 CENPUQ71F23 418 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms