RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 ZEB1P37275 1124 aaPredicted RBP3.63□□□□□ -1.83
CD44-238ENST00000534296 TARDBPQ13148 414 aaKnown RBP eCLIP3.63□□□□□ -1.83
CD44-238ENST00000534296 MPP3Q13368 585 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 TP53BP2Q13625 1128 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 CCDC157Q569K6 752 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 BRDTQ58F21 947 aaPredicted RBP3.63□□□□□ -1.83
CD44-238ENST00000534296 CRB2Q5IJ48 1285 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 TMEM240Q5SV17 173 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 Q6YL49 198 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 ZNF365Q70YC5 407 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 CLNKQ7Z7G1 428 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 C3orf20Q8ND61 904 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 IFI44Q8TCB0 444 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 ZG16BQ96DA0 208 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 NEU1Q99519 415 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 MYOCQ99972 504 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 TEX101Q9BY14 249 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 CASS4Q9NQ75 786 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 KMT5AQ9NQR1 393 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 AASDHPPTQ9NRN7 309 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 SIDT1Q9NXL6 827 aaKnown RBP3.63□□□□□ -1.83
CD44-238ENST00000534296 CFAP97Q9P2B7 532 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 FEZ2Q9UHY8 353 aaPredicted RBP3.63□□□□□ -1.83
CD44-238ENST00000534296 CDYLQ9Y232 598 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 PCDHGA9Q9Y5G4 932 aaKnown RBP3.63□□□□□ -1.83
CD44-238ENST00000534296 PCDHGA8Q9Y5G5 932 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 PCDHGA7Q9Y5G6 932 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 PCDHGA6Q9Y5G7 932 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 PCDHGA3Q9Y5H0 932 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 TNKSO95271 1327 aa3.63□□□□□ -1.83
CD44-238ENST00000534296 E2F8A0AVK6 867 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 FZD9O00144 591 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 GNAI2P04899 355 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 CYP2C19P33261 490 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 NEK2P51955 445 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 TLE1Q04724 770 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 IL10RAQ13651 578 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 C3orf36Q3SXR2 165 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 STRIP1Q5VSL9 837 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 METRNLQ641Q3 311 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 SLC4A10Q6U841 1118 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 IL17RDQ8NFM7 739 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 NSUN6Q8TEA1 469 aaKnown RBP3.62□□□□□ -1.83
CD44-238ENST00000534296 KAT5Q92993 513 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 RAB24Q969Q5 203 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 RGMAQ96B86 450 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 MTFMTQ96DP5 389 aaKnown RBP3.62□□□□□ -1.83
CD44-238ENST00000534296 HSPBAP1Q96EW2 488 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 MARS2Q96GW9 593 aaKnown RBP3.62□□□□□ -1.83
CD44-238ENST00000534296 FAM167AQ96KS9 214 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 NUP88Q99567 741 aaPredicted RBP3.62□□□□□ -1.83
CD44-238ENST00000534296 HEPHQ9BQS7 1158 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 TMEM74BQ9NUR3 256 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 RLIMQ9NVW2 624 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 LRIT1Q9P2V4 623 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 USP25Q9UHP3 1055 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 LIMCH1Q9UPQ0 1083 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 AATKQ6ZMQ8 1374 aa3.62□□□□□ -1.83
CD44-238ENST00000534296 GRID2IPA4D2P6 1211 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 SLC43A1O75387 559 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 AGFG2O95081 481 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 CHEK2O96017 543 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 FTLP02792 175 aaPredicted RBP3.61□□□□□ -1.83
CD44-238ENST00000534296 MALP21145 153 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 ZFP36P26651 326 aaKnown RBP3.61□□□□□ -1.83
CD44-238ENST00000534296 VAV2P52735 878 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 RPS7P62081 194 aaKnown RBP3.61□□□□□ -1.83
CD44-238ENST00000534296 NOMO3P69849 1222 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 NOMO2Q5JPE7 1267 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 UTP14CQ5TAP6 766 aaKnown RBP3.61□□□□□ -1.83
CD44-238ENST00000534296 B3GNTL1Q67FW5 361 aaPredicted RBP3.61□□□□□ -1.83
CD44-238ENST00000534296 SLC44A3Q8N4M1 653 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 DCBLD1Q8N8Z6 715 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 BEND2Q8NDZ0 799 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 NELL1Q92832 810 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 PTCD3Q96EY7 689 aaKnown RBP3.61□□□□□ -1.83
CD44-238ENST00000534296 MRGPRX4Q96LA9 322 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 CRAMP1Q96RY5 1269 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 SMOQ99835 787 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 ADAM2Q99965 735 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 IMPG2Q9BZV3 1241 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 WDCPQ9H6R7 721 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 BRD9Q9H8M2 597 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 ZNHIT2Q9UHR6 403 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 ANKRD6Q9Y2G4 727 aa3.61□□□□□ -1.83
CD44-238ENST00000534296 CCDC195A0A1B0GUA6 201 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 TOR1BO14657 336 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 PEX1O43933 1283 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 ESRRBO95718 433 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 NUDT3O95989 172 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 LMNAP02545 664 aaKnown RBP3.6□□□□□ -1.83
CD44-238ENST00000534296 EGR2P11161 476 aaPredicted RBP3.6□□□□□ -1.83
CD44-238ENST00000534296 FCER1AP12319 257 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 KCNA2P16389 499 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 BMP5P22003 454 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 EDNRBP24530 442 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 AKAP5P24588 427 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 CXCR5P32302 372 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 IL12RB1P42701 662 aa3.6□□□□□ -1.83
CD44-238ENST00000534296 PIK3CGP48736 1102 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms