RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 I3L4J1 428 aa14.07□□□□□ -0.16
VPS28-216ENST00000533806 M0QZQ0 153 aa14.07□□□□□ -0.16
VPS28-216ENST00000533806 SYN3O14994 580 aa14.07□□□□□ -0.16
VPS28-216ENST00000533806 ADAM12O43184 909 aa14.07□□□□□ -0.16
VPS28-216ENST00000533806 XPOTO43592 962 aaKnown RBP14.07□□□□□ -0.16
VPS28-216ENST00000533806 ADH1AP07327 375 aa14.07□□□□□ -0.16
VPS28-216ENST00000533806 IL9P15248 144 aa14.07□□□□□ -0.16
VPS28-216ENST00000533806 RPL17P18621 184 aaKnown RBP14.07□□□□□ -0.16
VPS28-216ENST00000533806 KLRC2P26717 231 aa14.07□□□□□ -0.16
VPS28-216ENST00000533806 TKTP29401 623 aaKnown RBP14.07□□□□□ -0.16
VPS28-216ENST00000533806 CREMQ03060 361 aa14.07□□□□□ -0.16
VPS28-216ENST00000533806 PNOCQ13519 176 aa14.07□□□□□ -0.16
VPS28-216ENST00000533806 CLUL1Q15846 466 aa14.07□□□□□ -0.16
VPS28-216ENST00000533806 C9orf57Q5W0N0 161 aa14.07□□□□□ -0.16
VPS28-216ENST00000533806 PDXDC1Q6P996 788 aa14.07□□□□□ -0.16
VPS28-216ENST00000533806 RSPO2Q6UXX9 243 aaPredicted RBP14.07□□□□□ -0.16
VPS28-216ENST00000533806 CBWD2Q8IUF1 395 aa14.07□□□□□ -0.16
VPS28-216ENST00000533806 BEST2Q8NFU1 509 aa14.07□□□□□ -0.16
VPS28-216ENST00000533806 FAM212AQ96EL1 285 aa14.07□□□□□ -0.16
VPS28-216ENST00000533806 GZF1Q9H116 711 aaPredicted RBP14.07□□□□□ -0.16
VPS28-216ENST00000533806 KIAA1586Q9HCI6 787 aa14.07□□□□□ -0.16
VPS28-216ENST00000533806 RBAKQ9NYW8 714 aaPredicted RBP14.07□□□□□ -0.16
VPS28-216ENST00000533806 MTRRQ9UBK8 725 aa14.07□□□□□ -0.16
VPS28-216ENST00000533806 BACE2Q9Y5Z0 518 aa14.07□□□□□ -0.16
VPS28-216ENST00000533806 NCOR1O75376 2440 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 ZNF233A6NK53 670 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 PDXKO00764 312 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 CLIC2O15247 247 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 SPTLC1O15269 473 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 TGM5O43548 720 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 SRGAP2BP0DMP2 458 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 PAX3P23760 479 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 CA8P35219 290 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 LILRA4P59901 499 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 PSMD5Q16401 504 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 SCARA3Q6AZY7 606 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 ANKS3Q6ZW76 656 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 CEP57Q86XR8 500 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 SLC9A9Q8IVB4 645 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 FEZF2Q8TBJ5 459 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 HDAC7Q8WUI4 952 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 BORCS6Q96GS4 357 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 ADAM7Q9H2U9 754 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 PDE11AQ9HCR9 933 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 DZANK1Q9NVP4 752 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 USP15Q9Y4E8 981 aaPredicted RBP14.06□□□□□ -0.16
VPS28-216ENST00000533806 CITO14578 2027 aa14.06□□□□□ -0.16
VPS28-216ENST00000533806 ITIH3Q06033 890 aa14.05□□□□□ -0.16
VPS28-216ENST00000533806 RAB33AQ14088 237 aa14.05□□□□□ -0.16
VPS28-216ENST00000533806 SNRNP35Q16560 246 aaKnown RBP14.05□□□□□ -0.16
VPS28-216ENST00000533806 SLC8B1Q6J4K2 584 aa14.05□□□□□ -0.16
VPS28-216ENST00000533806 HS2ST1Q7LGA3 356 aa14.05□□□□□ -0.16
VPS28-216ENST00000533806 PALB2Q86YC2 1186 aa14.05□□□□□ -0.16
VPS28-216ENST00000533806 GUF1Q8N442 669 aaKnown RBP14.05□□□□□ -0.16
VPS28-216ENST00000533806 C1orf127Q8N9H9 656 aa14.05□□□□□ -0.16
VPS28-216ENST00000533806 XXYLT1Q8NBI6 393 aa14.05□□□□□ -0.16
VPS28-216ENST00000533806 GOLGA5Q8TBA6 731 aa14.05□□□□□ -0.16
VPS28-216ENST00000533806 MFSD14AQ96MC6 490 aa14.05□□□□□ -0.16
VPS28-216ENST00000533806 NECAB3Q96P71 396 aaPredicted RBP14.05□□□□□ -0.16
VPS28-216ENST00000533806 GSDMAQ96QA5 445 aa14.05□□□□□ -0.16
VPS28-216ENST00000533806 UHRF1Q96T88 793 aaPredicted RBP14.05□□□□□ -0.16
VPS28-216ENST00000533806 CD320Q9NPF0 282 aa14.05□□□□□ -0.16
VPS28-216ENST00000533806 DPP3Q9NY33 737 aa14.05□□□□□ -0.16
VPS28-216ENST00000533806 PRKAG3Q9UGI9 489 aa14.05□□□□□ -0.16
VPS28-216ENST00000533806 PCDHB8Q9UN66 801 aa14.05□□□□□ -0.16
VPS28-216ENST00000533806 TRAF3IP3Q9Y228 551 aa14.05□□□□□ -0.16
VPS28-216ENST00000533806 NUB1Q9Y5A7 615 aa14.05□□□□□ -0.16
VPS28-216ENST00000533806 PCDHA5Q9Y5H7 936 aa14.05□□□□□ -0.16
VPS28-216ENST00000533806 PTPRJQ12913 1337 aa14.05□□□□□ -0.16
VPS28-216ENST00000533806 PDCD11Q14690 1871 aaKnown RBP14.05□□□□□ -0.16
VPS28-216ENST00000533806 C19orf67A6NJJ6 358 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 OAZ2O95190 189 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 GLUD1P00367 558 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 MCM4P33991 863 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 OR1D2P34982 312 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 MCCD1P59942 119 aaPredicted RBP14.04□□□□□ -0.16
VPS28-216ENST00000533806 ZP2Q05996 745 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 MYBPC2Q14324 1141 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 ZCWPW2Q504Y3 356 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 COBLL1Q53SF7 1204 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 VARS2Q5ST30 1063 aaKnown RBP14.04□□□□□ -0.16
VPS28-216ENST00000533806 C12orf76Q8N812 135 aaPredicted RBP14.04□□□□□ -0.16
VPS28-216ENST00000533806 CMASQ8NFW8 434 aaPredicted RBP14.04□□□□□ -0.16
VPS28-216ENST00000533806 OR5B17Q8NGF7 314 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 CCDC34Q96HJ3 373 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 FAM84AQ96KN4 292 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 RHOBTB2Q9BYZ6 727 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 PLEKHA4Q9H4M7 779 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 TSHZ2Q9NRE2 1034 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 INTS13Q9NVM9 706 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 SIX4Q9UIU6 781 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 CDH22Q9UJ99 828 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 FAM50BQ9Y247 325 aa14.04□□□□□ -0.16
VPS28-216ENST00000533806 VWA8A3KMH1 1905 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 ABLIM3O94929 683 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 CYP11A1P05108 521 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 SPATA31D3P0C874 917 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 TYMPP19971 482 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 CYP2J2P51589 502 aa14.03□□□□□ -0.16
VPS28-216ENST00000533806 UBE2HP62256 183 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms