RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 FDX1P10109 184 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 DSG3P32926 999 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 TDRD10Q5VZ19 366 aaKnown RBP20.47■□□□□ 0.87
VPS28-213ENST00000530983 ANKS1BQ7Z6G8 1248 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 VSIG10LQ86VR7 867 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 CKAP2Q8WWK9 683 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 MIEF2Q96C03 454 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 WNK4Q96J92 1243 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 C11orf70Q9BRQ4 267 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 PTPRJQ12913 1337 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 PSTPIP1O43586 416 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 DGAT1O75907 488 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 UBOX5O94941 541 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 BRAFP15056 766 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 ACO1P21399 889 aaKnown RBP20.47■□□□□ 0.87
VPS28-213ENST00000530983 RTP1P59025 263 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 BPIFB4P59827 614 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 CCNG2Q16589 344 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 NUGGCQ68CJ6 796 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 RTKN2Q8IZC4 609 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 CCDC63Q8NA47 563 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 MCPH1Q8NEM0 835 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 ATP6V0A1Q93050 837 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 LGALS13Q9UHV8 139 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 GGT7Q9UJ14 662 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 RIPK3Q9Y572 518 aa20.47■□□□□ 0.87
VPS28-213ENST00000530983 EXTL3O43909 919 aa20.46■□□□□ 0.87
VPS28-213ENST00000530983 C4BPAP04003 597 aaKnown RBP20.46■□□□□ 0.87
VPS28-213ENST00000530983 KCNA2P16389 499 aa20.46■□□□□ 0.87
VPS28-213ENST00000530983 BAATQ14032 418 aaPredicted RBP20.46■□□□□ 0.87
VPS28-213ENST00000530983 PSMD6Q15008 389 aa20.46■□□□□ 0.87
VPS28-213ENST00000530983 WDR44Q5JSH3 913 aa20.46■□□□□ 0.87
VPS28-213ENST00000530983 SWSAP1Q6NVH7 229 aa20.46■□□□□ 0.87
VPS28-213ENST00000530983 EP400NLQ6ZTU2 488 aa20.46■□□□□ 0.87
VPS28-213ENST00000530983 PASD1Q8IV76 773 aa20.46■□□□□ 0.87
VPS28-213ENST00000530983 RHOT1Q8IXI2 618 aa20.46■□□□□ 0.87
VPS28-213ENST00000530983 GPRASP2Q96D09 838 aa20.46■□□□□ 0.87
VPS28-213ENST00000530983 OSBPL8Q9BZF1 889 aa20.46■□□□□ 0.87
VPS28-213ENST00000530983 EPB41L3Q9Y2J2 1087 aaPredicted RBP20.46■□□□□ 0.87
VPS28-213ENST00000530983 VNN1O95497 513 aa20.45■□□□□ 0.87
VPS28-213ENST00000530983 ATP6V1G2O95670 118 aa20.45■□□□□ 0.87
VPS28-213ENST00000530983 NR3C2P08235 984 aa20.45■□□□□ 0.87
VPS28-213ENST00000530983 TNNI1P19237 187 aa20.45■□□□□ 0.87
VPS28-213ENST00000530983 NOMO3P69849 1222 aa20.45■□□□□ 0.87
VPS28-213ENST00000530983 MAMLD1Q13495 774 aa20.45■□□□□ 0.87
VPS28-213ENST00000530983 ZNF365Q70YC5 407 aa20.45■□□□□ 0.87
VPS28-213ENST00000530983 KATNAL2Q8IYT4 538 aa20.45■□□□□ 0.87
VPS28-213ENST00000530983 GDAP1Q8TB36 358 aa20.45■□□□□ 0.87
VPS28-213ENST00000530983 FAM212AQ96EL1 285 aa20.45■□□□□ 0.87
VPS28-213ENST00000530983 TBK1Q9UHD2 729 aa20.45■□□□□ 0.87
VPS28-213ENST00000530983 RGS20O76081 388 aa20.45■□□□□ 0.86
VPS28-213ENST00000530983 CCND2P30279 289 aa20.45■□□□□ 0.86
VPS28-213ENST00000530983 PIK3CAP42336 1068 aa20.45■□□□□ 0.86
VPS28-213ENST00000530983 NLRP11P59045 1033 aaKnown RBP20.45■□□□□ 0.86
VPS28-213ENST00000530983 MTMR2Q13614 643 aa20.45■□□□□ 0.86
VPS28-213ENST00000530983 IZUMO3Q5VZ72 239 aa20.45■□□□□ 0.86
VPS28-213ENST00000530983 PRUNE1Q86TP1 453 aa20.45■□□□□ 0.86
VPS28-213ENST00000530983 RELL1Q8IUW5 271 aa20.45■□□□□ 0.86
VPS28-213ENST00000530983 CCDC89Q8N998 374 aa20.45■□□□□ 0.86
VPS28-213ENST00000530983 AGBL3Q8NEM8 1001 aa20.45■□□□□ 0.86
VPS28-213ENST00000530983 FNBP1Q96RU3 617 aa20.45■□□□□ 0.86
VPS28-213ENST00000530983 POLR3FQ9H1D9 316 aaPredicted RBP20.45■□□□□ 0.86
VPS28-213ENST00000530983 RPAP3Q9H6T3 665 aaPredicted RBP20.45■□□□□ 0.86
VPS28-213ENST00000530983 APOBEC3GQ9HC16 384 aaKnown RBP20.45■□□□□ 0.86
VPS28-213ENST00000530983 CYP26B1Q9NR63 512 aa20.45■□□□□ 0.86
VPS28-213ENST00000530983 SEPT9Q9UHD8 586 aaPredicted RBP20.45■□□□□ 0.86
VPS28-213ENST00000530983 NAALADL1Q9UQQ1 740 aa20.45■□□□□ 0.86
VPS28-213ENST00000530983 CTDP1Q9Y5B0 961 aaPredicted RBP20.45■□□□□ 0.86
VPS28-213ENST00000530983 COL11A1P12107 1806 aaPredicted RBP20.45■□□□□ 0.86
VPS28-213ENST00000530983 VWA5AO00534 786 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 ZBED4O75132 1171 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 CD58P19256 250 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 SSTR3P32745 418 aaPredicted RBP20.44■□□□□ 0.86
VPS28-213ENST00000530983 LIG4P49917 911 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 E2F5Q15329 346 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 GALNTL6Q49A17 601 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 TMEM63BQ5T3F8 832 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 XRRA1Q6P2D8 792 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 SEPT14Q6ZU15 432 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 TBC1D1Q86TI0 1168 aaPredicted RBP20.44■□□□□ 0.86
VPS28-213ENST00000530983 CCDC60Q8IWA6 550 aaPredicted RBP20.44■□□□□ 0.86
VPS28-213ENST00000530983 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.44■□□□□ 0.86
VPS28-213ENST00000530983 C9orf72Q96LT7 481 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 ATP6V0A4Q9HBG4 840 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 EURLQ9NYK6 297 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 ADAM22Q9P0K1 906 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 CDH16O75309 829 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 SUN1O94901 812 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 KLRC2P26717 231 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 ACOT2P49753 483 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 PRKCEQ02156 737 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 LIN9Q5TKA1 542 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 PLEKHA7Q6IQ23 1121 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 ABRAQ8N0Z2 381 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 IFT74Q96LB3 600 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 TEPSINQ96N21 525 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 KIAA1586Q9HCI6 787 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 RNF146Q9NTX7 359 aa20.44■□□□□ 0.86
VPS28-213ENST00000530983 MYH9P35579 1960 aaKnown RBP20.44■□□□□ 0.86
VPS28-213ENST00000530983 TNS1Q9HBL0 1735 aaKnown RBP20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms