RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, human

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD7-208	ENST00000528280	PANK2	Q9BZ23	570 aa		10.44	□□□□□ -0.74
CHD7-208	ENST00000528280	TNMD	Q9H2S6	317 aa		10.44	□□□□□ -0.74
CHD7-208	ENST00000528280	MAGEF1	Q9HAY2	307 aa		10.44	□□□□□ -0.74
CHD7-208	ENST00000528280	PANK4	Q9NVE7	773 aa		10.44	□□□□□ -0.74
CHD7-208	ENST00000528280	FAM13B	Q9NYF5	915 aa		10.44	□□□□□ -0.74
CHD7-208	ENST00000528280	CACNG4	Q9UBN1	327 aa		10.44	□□□□□ -0.74
CHD7-208	ENST00000528280	FBXW11	Q9UKB1	542 aa		10.44	□□□□□ -0.74
CHD7-208	ENST00000528280	AGO2	Q9UKV8	859 aa	Known RBP	10.44	□□□□□ -0.74
CHD7-208	ENST00000528280	MYMK	A6NI61	221 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	LACTBL1	A8MY62	500 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	KIAA0391	O15091	583 aa	Known RBP	10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	RFPL2	O75678	378 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	IL18RAP	O95256	599 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	F13A1	P00488	732 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	CXCL8	P10145	99 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	IDE	P14735	1019 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	TKT	P29401	623 aa	Known RBP	10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	GBP2	P32456	591 aa	Predicted RBP	10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	MCM4	P33991	863 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	NUBP1	P53384	320 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	SOX4	Q06945	474 aa	Predicted RBP	10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	TDG	Q13569	410 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	MRPL58	Q14197	206 aa	Known RBP	10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	SEZ6	Q53EL9	994 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	VARS2	Q5ST30	1063 aa	Known RBP	10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	L1TD1	Q5T7N2	865 aa	Known RBP	10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	SPATA1	Q5VX52	437 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	SLC8B1	Q6J4K2	584 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	CD300LG	Q6UXG3	332 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	USP37	Q86T82	979 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	SYCP3	Q8IZU3	236 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	LRRC15	Q8TF66	581 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	CACTIN	Q8WUQ7	758 aa	Known RBP	10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	POMGNT1	Q8WZA1	660 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	C18orf25	Q96B23	403 aa	Predicted RBP	10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	FAM212A	Q96EL1	285 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	FIZ1	Q96SL8	496 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	STRA6	Q9BX79	667 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	GOLGA2P5	Q9HBQ8	144 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	EPS15L1	Q9UBC2	864 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	CPSF3	Q9UKF6	684 aa	Known RBP	10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	PCDHB8	Q9UN66	801 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	C2CD2	Q9Y426	696 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	ATP6V1D	Q9Y5K8	247 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	CDY1	Q9Y6F8	540 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	ZNF292	O60281	2723 aa		10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	MTCL1	Q9Y4B5	1905 aa	Known RBP	10.43	□□□□□ -0.74
CHD7-208	ENST00000528280	VPS13A	Q96RL7	3174 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	CLUH	O75153	1309 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280		M0QZQ0	153 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	PRRG1	O14668	218 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	ABLIM3	O94929	683 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	OAZ2	O95190	189 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	GCNT3	O95395	438 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	C8A	P07357	584 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	ATF2	P15336	505 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	PTPN2	P17706	415 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	GART	P22102	1010 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	SP100	P23497	879 aa	Predicted RBP	10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	FSHR	P23945	695 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	BRCC3	P46736	316 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	ME1	P48163	572 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	SNRPF	P62306	86 aa	Known RBP	10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	YWHAH	Q04917	246 aa	Predicted RBP	10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	TMEM132D	Q14C87	1099 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	ENOX2	Q16206	610 aa	Known RBP	10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	CTXN3	Q4LDR2	81 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	ZNF280D	Q6N043	979 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	CNNM4	Q6P4Q7	775 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	DSTYK	Q6XUX3	929 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	SFR1	Q86XK3	245 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	PDILT	Q8N807	584 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	ZNF707	Q96C28	371 aa	Predicted RBP	10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	HAPLN2	Q9GZV7	340 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	KBTBD4	Q9NVX7	518 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	RCOR1	Q9UKL0	485 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	DSE	Q9UL01	958 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	KCNH3	Q9ULD8	1083 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	GVINP1	Q7Z2Y8	2422 aa		10.42	□□□□□ -0.74
CHD7-208	ENST00000528280	CIT	O14578	2027 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	BAHCC1	Q9P281	2608 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	DMD	P11532	3685 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	FRMD3	A2A2Y4	597 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	PRR23A	A6NEV1	266 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	OR6C75	A6NL08	312 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	ANKRD63	C9JTQ0	380 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	ZNF197	O14709	1029 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	FAM189A1	O60320	539 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	TBC1D4	O60343	1298 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	PPP1R37	O75864	691 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	LRG1	P02750	347 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	LAMP2	P13473	410 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	TYMP	P19971	482 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	AVPR2	P30518	371 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	TNFSF9	P41273	254 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	ACOT2	P49753	483 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	SURF1	Q15526	300 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	ARMCX5	Q6P1M9	558 aa		10.41	□□□□□ -0.74
CHD7-208	ENST00000528280	METTL23	Q86XA0	190 aa		10.41	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms