RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 NUB1Q9Y5A7 615 aa25.79■■□□□ 1.72
CPSF1-202ENST00000527827 NCAM2O15394 837 aa25.78■■□□□ 1.72
CPSF1-202ENST00000527827 MICAL2O94851 1124 aa25.78■■□□□ 1.72
CPSF1-202ENST00000527827 U2AF2P26368 475 aaKnown RBP eCLIP25.78■■□□□ 1.72
CPSF1-202ENST00000527827 CDC25AP30304 524 aa25.78■■□□□ 1.72
CPSF1-202ENST00000527827 CTXN3Q4LDR2 81 aa25.78■■□□□ 1.72
CPSF1-202ENST00000527827 TPGS2Q68CL5 300 aa25.78■■□□□ 1.72
CPSF1-202ENST00000527827 ZNF687Q8N1G0 1237 aa25.78■■□□□ 1.72
CPSF1-202ENST00000527827 ATRIPQ8WXE1 791 aa25.78■■□□□ 1.72
CPSF1-202ENST00000527827 MMTAG2Q9BU76 263 aaKnown RBP25.78■■□□□ 1.72
CPSF1-202ENST00000527827 RAB34Q9BZG1 259 aa25.78■■□□□ 1.72
CPSF1-202ENST00000527827 SFI1A8K8P3 1242 aa25.77■■□□□ 1.72
CPSF1-202ENST00000527827 ZNF197O14709 1029 aa25.77■■□□□ 1.72
CPSF1-202ENST00000527827 SLC16A4O15374 487 aa25.77■■□□□ 1.72
CPSF1-202ENST00000527827 LILRB5O75023 590 aa25.77■■□□□ 1.72
CPSF1-202ENST00000527827 HARSP12081 509 aaKnown RBP25.77■■□□□ 1.72
CPSF1-202ENST00000527827 ADCY1Q08828 1119 aa25.77■■□□□ 1.72
CPSF1-202ENST00000527827 SLC10A6Q3KNW5 377 aa25.77■■□□□ 1.72
CPSF1-202ENST00000527827 TSSK4Q6SA08 328 aa25.77■■□□□ 1.72
CPSF1-202ENST00000527827 PDZD4Q76G19 769 aaPredicted RBP25.77■■□□□ 1.72
CPSF1-202ENST00000527827 HS6ST3Q8IZP7 471 aa25.77■■□□□ 1.72
CPSF1-202ENST00000527827 ASB16Q96NS5 453 aa25.77■■□□□ 1.72
CPSF1-202ENST00000527827 NTPCRQ9BSD7 190 aaKnown RBP25.77■■□□□ 1.72
CPSF1-202ENST00000527827 C17orf75Q9HAS0 396 aa25.77■■□□□ 1.72
CPSF1-202ENST00000527827 ZFP14Q9HCL3 533 aa25.77■■□□□ 1.72
CPSF1-202ENST00000527827 PRMT8Q9NR22 394 aaPredicted RBP25.77■■□□□ 1.72
CPSF1-202ENST00000527827 MRPS17Q9Y2R5 130 aaKnown RBP25.77■■□□□ 1.72
CPSF1-202ENST00000527827 TICRRQ7Z2Z1 1910 aa25.76■■□□□ 1.72
CPSF1-202ENST00000527827 MOSPD3O75425 235 aa25.76■■□□□ 1.71
CPSF1-202ENST00000527827 SEZ6Q53EL9 994 aa25.76■■□□□ 1.71
CPSF1-202ENST00000527827 KRT79Q5XKE5 535 aa25.76■■□□□ 1.71
CPSF1-202ENST00000527827 FAM184AQ8NB25 1140 aa25.76■■□□□ 1.71
CPSF1-202ENST00000527827 DDX12PQ92771 950 aa25.76■■□□□ 1.71
CPSF1-202ENST00000527827 ZSWIM3Q96MP5 696 aa25.76■■□□□ 1.71
CPSF1-202ENST00000527827 TBC1D32Q96NH3 1257 aa25.76■■□□□ 1.71
CPSF1-202ENST00000527827 BRD9Q9H8M2 597 aa25.76■■□□□ 1.71
CPSF1-202ENST00000527827 CEP72Q9P209 647 aa25.76■■□□□ 1.71
CPSF1-202ENST00000527827 NCDNQ9UBB6 729 aa25.76■■□□□ 1.71
CPSF1-202ENST00000527827 NCOR2Q9Y618 2525 aa25.75■■□□□ 1.71
CPSF1-202ENST00000527827 EIF5BO60841 1220 aaKnown RBP25.75■■□□□ 1.71
CPSF1-202ENST00000527827 MCM4P33991 863 aa25.75■■□□□ 1.71
CPSF1-202ENST00000527827 MTAPQ13126 283 aa25.75■■□□□ 1.71
CPSF1-202ENST00000527827 ZNF280DQ6N043 979 aa25.75■■□□□ 1.71
CPSF1-202ENST00000527827 MAP4K3Q8IVH8 894 aa25.75■■□□□ 1.71
CPSF1-202ENST00000527827 TMEM130Q8N3G9 435 aa25.75■■□□□ 1.71
CPSF1-202ENST00000527827 TRMT61BQ9BVS5 477 aaKnown RBP25.75■■□□□ 1.71
CPSF1-202ENST00000527827 EPC1Q9H2F5 836 aa25.75■■□□□ 1.71
CPSF1-202ENST00000527827 TUBGCP4Q9UGJ1 667 aa25.75■■□□□ 1.71
CPSF1-202ENST00000527827 AFF4Q9UHB7 1163 aaKnown RBP25.75■■□□□ 1.71
CPSF1-202ENST00000527827 TOM1L1O75674 476 aa25.74■■□□□ 1.71
CPSF1-202ENST00000527827 GUCY2CP25092 1073 aa25.74■■□□□ 1.71
CPSF1-202ENST00000527827 PRPHP41219 470 aa25.74■■□□□ 1.71
CPSF1-202ENST00000527827 TWF1Q12792 350 aa25.74■■□□□ 1.71
CPSF1-202ENST00000527827 RSPO4Q2I0M5 234 aaPredicted RBP25.74■■□□□ 1.71
CPSF1-202ENST00000527827 CYP4A22Q5TCH4 519 aa25.74■■□□□ 1.71
CPSF1-202ENST00000527827 VITQ6UXI7 678 aa25.74■■□□□ 1.71
CPSF1-202ENST00000527827 RNF19BQ6ZMZ0 732 aa25.74■■□□□ 1.71
CPSF1-202ENST00000527827 APPL2Q8NEU8 664 aa25.74■■□□□ 1.71
CPSF1-202ENST00000527827 SPIRE2Q8WWL2 714 aa25.74■■□□□ 1.71
CPSF1-202ENST00000527827 SMARCD2Q92925 531 aa25.74■■□□□ 1.71
CPSF1-202ENST00000527827 ZSCAN31Q96LW9 406 aaPredicted RBP25.74■■□□□ 1.71
CPSF1-202ENST00000527827 ZNF512Q96ME7 567 aaPredicted RBP25.74■■□□□ 1.71
CPSF1-202ENST00000527827 ANKFY1Q9P2R3 1169 aa25.74■■□□□ 1.71
CPSF1-202ENST00000527827 MAFFQ9ULX9 164 aa25.74■■□□□ 1.71
CPSF1-202ENST00000527827 NDRG2Q9UN36 371 aaKnown RBP25.74■■□□□ 1.71
CPSF1-202ENST00000527827 PCDHB8Q9UN66 801 aa25.74■■□□□ 1.71
CPSF1-202ENST00000527827 SMG5Q9UPR3 1016 aaKnown RBP25.74■■□□□ 1.71
CPSF1-202ENST00000527827 LAD1O00515 517 aa25.73■■□□□ 1.71
CPSF1-202ENST00000527827 NEFLP07196 543 aa25.73■■□□□ 1.71
CPSF1-202ENST00000527827 EPHA5P54756 1037 aa25.73■■□□□ 1.71
CPSF1-202ENST00000527827 NOLC1Q14978 699 aaKnown RBP eCLIP25.73■■□□□ 1.71
CPSF1-202ENST00000527827 IQCEQ6IPM2 695 aa25.73■■□□□ 1.71
CPSF1-202ENST00000527827 ELMOD1Q8N336 334 aa25.73■■□□□ 1.71
CPSF1-202ENST00000527827 TMEM161BQ8NDZ6 487 aa25.73■■□□□ 1.71
CPSF1-202ENST00000527827 TIPINQ9BVW5 301 aa25.73■■□□□ 1.71
CPSF1-202ENST00000527827 ZNF334Q9HCZ1 680 aaPredicted RBP25.73■■□□□ 1.71
CPSF1-202ENST00000527827 PPP4R2Q9NY27 417 aa25.73■■□□□ 1.71
CPSF1-202ENST00000527827 NCANO14594 1321 aa25.72■■□□□ 1.71
CPSF1-202ENST00000527827 MAN2B1O00754 1011 aa25.72■■□□□ 1.71
CPSF1-202ENST00000527827 MAPTP10636 758 aaKnown RBP25.72■■□□□ 1.71
CPSF1-202ENST00000527827 TDGF1P13385 188 aa25.72■■□□□ 1.71
CPSF1-202ENST00000527827 GJA1P17302 382 aa25.72■■□□□ 1.71
CPSF1-202ENST00000527827 PSMC3P17980 439 aa25.72■■□□□ 1.71
CPSF1-202ENST00000527827 GDI1P31150 447 aa25.72■■□□□ 1.71
CPSF1-202ENST00000527827 VIPR2P41587 438 aa25.72■■□□□ 1.71
CPSF1-202ENST00000527827 RAD51AP2Q09MP3 1159 aa25.72■■□□□ 1.71
CPSF1-202ENST00000527827 STRN3Q13033 797 aa25.72■■□□□ 1.71
CPSF1-202ENST00000527827 DTHD1Q6ZMT9 781 aa25.72■■□□□ 1.71
CPSF1-202ENST00000527827 BEST2Q8NFU1 509 aa25.72■■□□□ 1.71
CPSF1-202ENST00000527827 IRF7Q92985 503 aa25.72■■□□□ 1.71
CPSF1-202ENST00000527827 HAPLN2Q9GZV7 340 aa25.72■■□□□ 1.71
CPSF1-202ENST00000527827 CHRDQ9H2X0 955 aa25.72■■□□□ 1.71
CPSF1-202ENST00000527827 TRPV5Q9NQA5 729 aa25.72■■□□□ 1.71
CPSF1-202ENST00000527827 EIF4ENIF1Q9NRA8 985 aaKnown RBP25.72■■□□□ 1.71
CPSF1-202ENST00000527827 SH2B1Q9NRF2 756 aaPredicted RBP25.72■■□□□ 1.71
CPSF1-202ENST00000527827 VNN2O95498 520 aa25.71■■□□□ 1.71
CPSF1-202ENST00000527827 MYL4P12829 197 aa25.71■■□□□ 1.71
CPSF1-202ENST00000527827 PLS3P13797 630 aa25.71■■□□□ 1.71
CPSF1-202ENST00000527827 CPB1P15086 417 aa25.71■■□□□ 1.71
CPSF1-202ENST00000527827 MCL1Q07820 350 aa25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms