RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 NT5DC4Q86YG4 428 aa22.39■■□□□ 1.17
VPS28-206ENST00000526734 SYCP3Q8IZU3 236 aa22.39■■□□□ 1.17
VPS28-206ENST00000526734 TBC1D7Q9P0N9 293 aa22.39■■□□□ 1.17
VPS28-206ENST00000526734 CDY1Q9Y6F8 540 aa22.39■■□□□ 1.17
VPS28-206ENST00000526734 TRIP11Q15643 1979 aa22.39■■□□□ 1.17
VPS28-206ENST00000526734 PDCD11Q14690 1871 aaKnown RBP22.39■■□□□ 1.17
VPS28-206ENST00000526734 DENND4AQ7Z401 1863 aa22.39■■□□□ 1.17
VPS28-206ENST00000526734 FAM86C2PA6NEL3 165 aa22.38■■□□□ 1.17
VPS28-206ENST00000526734 I3L4J1 428 aa22.38■■□□□ 1.17
VPS28-206ENST00000526734 XYLBO75191 536 aa22.38■■□□□ 1.17
VPS28-206ENST00000526734 C8AP07357 584 aa22.38■■□□□ 1.17
VPS28-206ENST00000526734 MYBP10242 640 aa22.38■■□□□ 1.17
VPS28-206ENST00000526734 SP100P23497 879 aaPredicted RBP22.38■■□□□ 1.17
VPS28-206ENST00000526734 IGFBP6P24592 240 aaPredicted RBP22.38■■□□□ 1.17
VPS28-206ENST00000526734 AARSP49588 968 aaKnown RBP eCLIP22.38■■□□□ 1.171e-6■■■■■ 36.1
VPS28-206ENST00000526734 ASIC1P78348 528 aa22.38■■□□□ 1.17
VPS28-206ENST00000526734 MRPL58Q14197 206 aaKnown RBP22.38■■□□□ 1.17
VPS28-206ENST00000526734 TMEM132DQ14C87 1099 aa22.38■■□□□ 1.17
VPS28-206ENST00000526734 PPM1LQ5SGD2 360 aa22.38■■□□□ 1.17
VPS28-206ENST00000526734 JADE1Q6IE81 842 aa22.38■■□□□ 1.17
VPS28-206ENST00000526734 FAM212AQ96EL1 285 aa22.38■■□□□ 1.17
VPS28-206ENST00000526734 C7orf25Q9BPX7 421 aa22.38■■□□□ 1.17
VPS28-206ENST00000526734 MAFFQ9ULX9 164 aa22.38■■□□□ 1.17
VPS28-206ENST00000526734 SORCS3Q9UPU3 1222 aa22.38■■□□□ 1.17
VPS28-206ENST00000526734 M0QZQ0 153 aa22.37■■□□□ 1.17
VPS28-206ENST00000526734 EIF3DO15371 548 aaKnown RBP eCLIP22.37■■□□□ 1.17
VPS28-206ENST00000526734 POLR2DO15514 142 aaKnown RBP22.37■■□□□ 1.17
VPS28-206ENST00000526734 ADAM12O43184 909 aa22.37■■□□□ 1.17
VPS28-206ENST00000526734 COL9A1P20849 921 aa22.37■■□□□ 1.17
VPS28-206ENST00000526734 ADSSP30520 456 aa22.37■■□□□ 1.17
VPS28-206ENST00000526734 ACOT2P49753 483 aa22.37■■□□□ 1.17
VPS28-206ENST00000526734 CASP5P51878 434 aa22.37■■□□□ 1.17
VPS28-206ENST00000526734 SPAG1Q07617 926 aa22.37■■□□□ 1.17
VPS28-206ENST00000526734 SIGLEC14Q08ET2 396 aa22.37■■□□□ 1.17
VPS28-206ENST00000526734 MTMR3Q13615 1198 aa22.37■■□□□ 1.17
VPS28-206ENST00000526734 UBALD2Q8IYN6 164 aa22.37■■□□□ 1.17
VPS28-206ENST00000526734 VWA8A3KMH1 1905 aa22.37■■□□□ 1.17
VPS28-206ENST00000526734 TISP43B9A030 160 aa22.36■■□□□ 1.17
VPS28-206ENST00000526734 TBC1D4O60343 1298 aa22.36■■□□□ 1.17
VPS28-206ENST00000526734 TPGS2Q68CL5 300 aa22.36■■□□□ 1.17
VPS28-206ENST00000526734 TRIM67Q6ZTA4 783 aa22.36■■□□□ 1.17
VPS28-206ENST00000526734 BMP8AQ7Z5Y6 402 aa22.36■■□□□ 1.17
VPS28-206ENST00000526734 CEP57L1Q8IYX8 460 aa22.36■■□□□ 1.17
VPS28-206ENST00000526734 ZNF461Q8TAF7 563 aa22.36■■□□□ 1.17
VPS28-206ENST00000526734 SPATA32Q96LK8 384 aa22.36■■□□□ 1.17
VPS28-206ENST00000526734 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.36■■□□□ 1.172e-7■■■■□ 26
VPS28-206ENST00000526734 USP25Q9UHP3 1055 aa22.36■■□□□ 1.17
VPS28-206ENST00000526734 KCNH3Q9ULD8 1083 aa22.36■■□□□ 1.17
VPS28-206ENST00000526734 HCN4Q9Y3Q4 1203 aa22.36■■□□□ 1.17
VPS28-206ENST00000526734 UBE4BO95155 1302 aa22.35■■□□□ 1.17
VPS28-206ENST00000526734 NFICP08651 508 aa22.35■■□□□ 1.17
VPS28-206ENST00000526734 ROR1Q01973 937 aa22.35■■□□□ 1.17
VPS28-206ENST00000526734 KCNA1Q09470 495 aa22.35■■□□□ 1.17
VPS28-206ENST00000526734 CTXN3Q4LDR2 81 aa22.35■■□□□ 1.17
VPS28-206ENST00000526734 FAM26FQ5R3K3 315 aa22.35■■□□□ 1.17
VPS28-206ENST00000526734 UNC13DQ70J99 1090 aa22.35■■□□□ 1.17
VPS28-206ENST00000526734 BRSK2Q8IWQ3 736 aa22.35■■□□□ 1.17
VPS28-206ENST00000526734 SLC7A14Q8TBB6 771 aa22.35■■□□□ 1.17
VPS28-206ENST00000526734 SCAND2PQ9GZW5 306 aaPredicted RBP22.35■■□□□ 1.17
VPS28-206ENST00000526734 FBXL5Q9UKA1 691 aa22.35■■□□□ 1.17
VPS28-206ENST00000526734 ARIH1Q9Y4X5 557 aaPredicted RBP22.35■■□□□ 1.17
VPS28-206ENST00000526734 ZFP37Q9Y6Q3 630 aaPredicted RBP22.35■■□□□ 1.17
VPS28-206ENST00000526734 MTCL1Q9Y4B5 1905 aaKnown RBP22.35■■□□□ 1.17
VPS28-206ENST00000526734 PVALEFA0A1B0GWK0 134 aa22.34■■□□□ 1.17
VPS28-206ENST00000526734 ABLIM3O94929 683 aa22.34■■□□□ 1.17
VPS28-206ENST00000526734 OAZ2O95190 189 aa22.34■■□□□ 1.17
VPS28-206ENST00000526734 TYMPP19971 482 aa22.34■■□□□ 1.17
VPS28-206ENST00000526734 CMA1P23946 247 aa22.34■■□□□ 1.17
VPS28-206ENST00000526734 ELF1P32519 619 aa22.34■■□□□ 1.17
VPS28-206ENST00000526734 YWHAHQ04917 246 aaPredicted RBP22.34■■□□□ 1.17
VPS28-206ENST00000526734 ARMCX5Q6P1M9 558 aa22.34■■□□□ 1.17
VPS28-206ENST00000526734 CRELD2Q6UXH1 353 aaPredicted RBP22.34■■□□□ 1.17
VPS28-206ENST00000526734 RSPO2Q6UXX9 243 aaPredicted RBP22.34■■□□□ 1.17
VPS28-206ENST00000526734 DSTYKQ6XUX3 929 aa22.34■■□□□ 1.17
VPS28-206ENST00000526734 USP37Q86T82 979 aa22.34■■□□□ 1.17
VPS28-206ENST00000526734 LEO1Q8WVC0 666 aaPredicted RBP22.34■■□□□ 1.17
VPS28-206ENST00000526734 NXPE3Q969Y0 559 aa22.34■■□□□ 1.17
VPS28-206ENST00000526734 MFSD14AQ96MC6 490 aa22.34■■□□□ 1.17
VPS28-206ENST00000526734 FAM213AQ9BRX8 229 aa22.34■■□□□ 1.17
VPS28-206ENST00000526734 IGSF9Q9P2J2 1179 aa22.34■■□□□ 1.17
VPS28-206ENST00000526734 EPS15L1Q9UBC2 864 aa22.34■■□□□ 1.17
VPS28-206ENST00000526734 ZDHHC9Q9Y397 364 aa22.34■■□□□ 1.17
VPS28-206ENST00000526734 ANO9A1A5B4 782 aa22.33■■□□□ 1.17
VPS28-206ENST00000526734 TMEM221A6NGB7 291 aa22.33■■□□□ 1.17
VPS28-206ENST00000526734 M0R296 226 aa22.33■■□□□ 1.17
VPS28-206ENST00000526734 EXTL3O43909 919 aa22.33■■□□□ 1.17
VPS28-206ENST00000526734 PRPF6O94906 941 aaKnown RBP22.33■■□□□ 1.17
VPS28-206ENST00000526734 SLFN14P0C7P3 912 aa22.33■■□□□ 1.17
VPS28-206ENST00000526734 ODC1P11926 461 aa22.33■■□□□ 1.17
VPS28-206ENST00000526734 ATF2P15336 505 aa22.33■■□□□ 1.17
VPS28-206ENST00000526734 SNRPFP62306 86 aaKnown RBP22.33■■□□□ 1.17
VPS28-206ENST00000526734 C9orf57Q5W0N0 161 aa22.33■■□□□ 1.17
VPS28-206ENST00000526734 FEZF2Q8TBJ5 459 aa22.33■■□□□ 1.17
VPS28-206ENST00000526734 FGFBP2Q9BYJ0 223 aa22.33■■□□□ 1.17
VPS28-206ENST00000526734 LIMD1Q9UGP4 676 aa22.33■■□□□ 1.17
VPS28-206ENST00000526734 C5orf42Q9H799 3197 aa22.32■■□□□ 1.16
VPS28-206ENST00000526734 OR6C75A6NL08 312 aa22.32■■□□□ 1.16
VPS28-206ENST00000526734 PIRO00625 290 aa22.32■■□□□ 1.16
VPS28-206ENST00000526734 MYL1P05976 194 aa22.32■■□□□ 1.16
VPS28-206ENST00000526734 GBP2P32456 591 aaPredicted RBP22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms