RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 GEN1Q17RS7 908 aa5.31□□□□□ -1.56
CD44-217ENST00000525348 KHDC1Q4VXA5 237 aaKnown RBP5.31□□□□□ -1.56
CD44-217ENST00000525348 UTP14CQ5TAP6 766 aaKnown RBP5.31□□□□□ -1.56
CD44-217ENST00000525348 CPA6Q8N4T0 437 aa5.31□□□□□ -1.56
CD44-217ENST00000525348 IL17RDQ8NFM7 739 aa5.31□□□□□ -1.56
CD44-217ENST00000525348 CHMP4CQ96CF2 233 aa5.31□□□□□ -1.56
CD44-217ENST00000525348 BOD1Q96IK1 185 aa5.31□□□□□ -1.56
CD44-217ENST00000525348 KLHL32Q96NJ5 620 aa5.31□□□□□ -1.56
CD44-217ENST00000525348 TMEM74BQ9NUR3 256 aa5.31□□□□□ -1.56
CD44-217ENST00000525348 CALCOCO1Q9P1Z2 691 aa5.31□□□□□ -1.56
CD44-217ENST00000525348 PACSIN3Q9UKS6 424 aa5.31□□□□□ -1.56
CD44-217ENST00000525348 F2RL2O00254 374 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 SNUPNO95149 360 aaKnown RBP5.3□□□□□ -1.56
CD44-217ENST00000525348 FOSP01100 380 aaPredicted RBP5.3□□□□□ -1.56
CD44-217ENST00000525348 ITGAMP11215 1152 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 MTHFD1P11586 935 aaKnown RBP5.3□□□□□ -1.56
CD44-217ENST00000525348 PDCP20941 246 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 MALP21145 153 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 TGM1P22735 817 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 SEC24CP53992 1094 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 ABHD17BQ5VST6 288 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 PPP4R3AQ6IN85 833 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.3□□□□□ -1.56
CD44-217ENST00000525348 GADL1Q6ZQY3 521 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 ZNF365Q70YC5 407 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 CATIPQ7Z7H3 387 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 ZBTB46Q86UZ6 589 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 MIER2Q8N344 545 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 LCORLQ8N3X6 602 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 PRR18Q8N4B5 295 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 TMIEQ8NEW7 156 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 NLGN4YQ8NFZ3 816 aaPredicted RBP5.3□□□□□ -1.56
CD44-217ENST00000525348 TOR3AQ9H497 397 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 UNKLQ9H9P5 680 aaKnown RBP5.3□□□□□ -1.56
CD44-217ENST00000525348 CYP4F11Q9HBI6 524 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 JKAMPQ9P055 326 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 C11orf21Q9P2W6 132 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 LUC7L2Q9Y383 392 aaKnown RBP5.3□□□□□ -1.56
CD44-217ENST00000525348 NOX1Q9Y5S8 564 aa5.3□□□□□ -1.56
CD44-217ENST00000525348 SALL3Q9BXA9 1300 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 hCG_2014768A0A024R1R8 64 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 TYRP1P17643 537 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 IBSPP21815 317 aaPredicted RBP5.29□□□□□ -1.56
CD44-217ENST00000525348 INHBEP58166 350 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 ATP2B3Q16720 1220 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 SPDYE7PQ495Y7 208 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 ARMC6Q6NXE6 501 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 SLC4A10Q6U841 1118 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 TTC7BQ86TV6 843 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 FAM43AQ8N2R8 423 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 HOOK2Q96ED9 719 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 LRIG1Q96JA1 1093 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 Q96MF0 132 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 COQ10AQ96MF6 247 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 PNKPQ96T60 521 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 PACSIN1Q9BY11 444 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 SYNPO2LQ9H987 977 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 GALNT9Q9HCQ5 603 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 ALG13Q9NP73 1137 aaKnown RBP5.29□□□□□ -1.56
CD44-217ENST00000525348 DDX56Q9NY93 547 aaKnown RBP5.29□□□□□ -1.56
CD44-217ENST00000525348 RNF181Q9P0P0 153 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 CTTNBP2NLQ9P2B4 639 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 CDYLQ9Y232 598 aa5.29□□□□□ -1.56
CD44-217ENST00000525348 POLR2AP24928 1970 aaKnown RBP5.28□□□□□ -1.56
CD44-217ENST00000525348 PRSS29PA6NIE9 313 aa5.28□□□□□ -1.56
CD44-217ENST00000525348 E9PLN8 166 aa5.28□□□□□ -1.56
CD44-217ENST00000525348 HKR1P10072 659 aa5.28□□□□□ -1.56
CD44-217ENST00000525348 ADRA1BP35368 520 aa5.28□□□□□ -1.56
CD44-217ENST00000525348 PLA2G5P39877 138 aa5.28□□□□□ -1.56
CD44-217ENST00000525348 MPLP40238 635 aa5.28□□□□□ -1.56
CD44-217ENST00000525348 VAV2P52735 878 aa5.28□□□□□ -1.56
CD44-217ENST00000525348 USP14P54578 494 aa5.28□□□□□ -1.56
CD44-217ENST00000525348 PURAQ00577 322 aaKnown RBP5.28□□□□□ -1.56
CD44-217ENST00000525348 TAP1Q03518 808 aa5.28□□□□□ -1.56
CD44-217ENST00000525348 SMN1Q16637 294 aaKnown RBP5.28□□□□□ -1.56
CD44-217ENST00000525348 FOXR2Q6PJQ5 311 aa5.28□□□□□ -1.56
CD44-217ENST00000525348 SLC44A3Q8N4M1 653 aa5.28□□□□□ -1.56
CD44-217ENST00000525348 NSUN7Q8NE18 718 aaKnown RBP5.28□□□□□ -1.56
CD44-217ENST00000525348 VKORC1Q9BQB6 163 aa5.28□□□□□ -1.56
CD44-217ENST00000525348 GTPBP4Q9BZE4 634 aaKnown RBP5.28□□□□□ -1.56
CD44-217ENST00000525348 MTO1Q9Y2Z2 717 aaKnown RBP5.28□□□□□ -1.56
CD44-217ENST00000525348 PCDHA3Q9Y5H8 950 aa5.28□□□□□ -1.56
CD44-217ENST00000525348 MAST3O60307 1309 aa5.27□□□□□ -1.57
CD44-217ENST00000525348 ERN1O75460 977 aaKnown RBP5.27□□□□□ -1.57
CD44-217ENST00000525348 ABLIM3O94929 683 aa5.27□□□□□ -1.57
CD44-217ENST00000525348 IL33O95760 270 aa5.27□□□□□ -1.57
CD44-217ENST00000525348 LMNAP02545 664 aaKnown RBP5.27□□□□□ -1.57
CD44-217ENST00000525348 POU2F2P09086 479 aa5.27□□□□□ -1.57
CD44-217ENST00000525348 FDXRP22570 491 aa5.27□□□□□ -1.57
CD44-217ENST00000525348 MXRA7P84157 204 aa5.27□□□□□ -1.57
CD44-217ENST00000525348 MC2RQ01718 297 aa5.27□□□□□ -1.57
CD44-217ENST00000525348 MCL1Q07820 350 aa5.27□□□□□ -1.57
CD44-217ENST00000525348 USP45Q70EL2 814 aa5.27□□□□□ -1.57
CD44-217ENST00000525348 PDPRQ8NCN5 879 aa5.27□□□□□ -1.57
CD44-217ENST00000525348 SUPT20HQ8NEM7 779 aa5.27□□□□□ -1.57
CD44-217ENST00000525348 HSPBAP1Q96EW2 488 aa5.27□□□□□ -1.57
CD44-217ENST00000525348 MED15Q96RN5 788 aa5.27□□□□□ -1.57
CD44-217ENST00000525348 C1orf43Q9BWL3 253 aa5.27□□□□□ -1.57
CD44-217ENST00000525348 PRDM13Q9H4Q3 707 aa5.27□□□□□ -1.57
CD44-217ENST00000525348 TCF7L1Q9HCS4 588 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms