RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 ZFPL1O95159 310 aa3.14□□□□□ -1.91
CD44-216ENST00000525293 SBK3P0C264 359 aa3.14□□□□□ -1.91
CD44-216ENST00000525293 TYRP1P17643 537 aa3.14□□□□□ -1.91
CD44-216ENST00000525293 FDXRP22570 491 aa3.14□□□□□ -1.91
CD44-216ENST00000525293 CXCR5P32302 372 aa3.14□□□□□ -1.91
CD44-216ENST00000525293 CLK3P49761 638 aaKnown RBP3.14□□□□□ -1.91
CD44-216ENST00000525293 CDKN1CP49918 316 aaPredicted RBP3.14□□□□□ -1.91
CD44-216ENST00000525293 CDC42EP1Q00587 391 aa3.14□□□□□ -1.91
CD44-216ENST00000525293 KIF23Q02241 960 aaPredicted RBP3.14□□□□□ -1.91
CD44-216ENST00000525293 SLFN5Q08AF3 891 aa3.14□□□□□ -1.91
CD44-216ENST00000525293 IL10RAQ13651 578 aa3.14□□□□□ -1.91
CD44-216ENST00000525293 CYP2A13Q16696 494 aa3.14□□□□□ -1.91
CD44-216ENST00000525293 ATP2B3Q16720 1220 aa3.14□□□□□ -1.91
CD44-216ENST00000525293 ERCC6LQ2NKX8 1250 aa3.14□□□□□ -1.91
CD44-216ENST00000525293 DACT2Q5SW24 774 aa3.14□□□□□ -1.91
CD44-216ENST00000525293 UTP14CQ5TAP6 766 aaKnown RBP3.14□□□□□ -1.91
CD44-216ENST00000525293 PRPF38AQ8NAV1 312 aaKnown RBP3.14□□□□□ -1.91
CD44-216ENST00000525293 NLGN4YQ8NFZ3 816 aaPredicted RBP3.14□□□□□ -1.91
CD44-216ENST00000525293 HDAC10Q969S8 669 aa3.14□□□□□ -1.91
CD44-216ENST00000525293 FUBP1Q96AE4 644 aaKnown RBP3.14□□□□□ -1.91
CD44-216ENST00000525293 MTMR8Q96EF0 704 aa3.14□□□□□ -1.91
CD44-216ENST00000525293 PTCD3Q96EY7 689 aaKnown RBP3.14□□□□□ -1.91
CD44-216ENST00000525293 NAP1L5Q96NT1 182 aaPredicted RBP3.14□□□□□ -1.91
CD44-216ENST00000525293 UNKLQ9H9P5 680 aaKnown RBP3.14□□□□□ -1.91
CD44-216ENST00000525293 PRDM16Q9HAZ2 1276 aa3.14□□□□□ -1.91
CD44-216ENST00000525293 IPPQ9Y573 584 aa3.14□□□□□ -1.91
CD44-216ENST00000525293 MRFAP1Q9Y605 127 aa3.14□□□□□ -1.91
CD44-216ENST00000525293 MAST3O60307 1309 aa3.14□□□□□ -1.91
CD44-216ENST00000525293 POLR2AP24928 1970 aaKnown RBP3.13□□□□□ -1.91
CD44-216ENST00000525293 SHTN1A0MZ66 631 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 MYADML2A6NDP7 307 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 CCDC154A6NI56 674 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 GABRDO14764 452 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 HAUS5O94927 633 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 AGFG2O95081 481 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 MTHFD1P11586 935 aaKnown RBP3.13□□□□□ -1.91
CD44-216ENST00000525293 FCER1AP12319 257 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 EDNRBP24530 442 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 SLC6A4P31645 630 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 PTH2RP49190 550 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 VAV2P52735 878 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 ZNF280AP59817 542 aaPredicted RBP3.13□□□□□ -1.91
CD44-216ENST00000525293 PTPN21Q16825 1174 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 GEN1Q17RS7 908 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 C3orf36Q3SXR2 165 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 PABPC1LQ4VXU2 614 aaKnown RBP3.13□□□□□ -1.91
CD44-216ENST00000525293 PRR16Q569H4 304 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 Q6ZNX1 250 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 PNMA8AQ86V59 439 aaPredicted RBP3.13□□□□□ -1.91
CD44-216ENST00000525293 ADGRG3Q86Y34 549 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 COLGALT2Q8IYK4 626 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 IFI44Q8TCB0 444 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 KAT5Q92993 513 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 COA7Q96BR5 231 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 CLPTM1LQ96KA5 538 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 TEKT5Q96M29 485 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 MED15Q96RN5 788 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 TLR10Q9BXR5 811 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 INSL6Q9Y581 213 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 PCDHB1Q9Y5F3 818 aa3.13□□□□□ -1.91
CD44-216ENST00000525293 COL11A2P13942 1736 aaPredicted RBP3.13□□□□□ -1.91
CD44-216ENST00000525293 FZD9O00144 591 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 SGTAO43765 313 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 ZNF169Q14929 603 aaPredicted RBP3.12□□□□□ -1.91
CD44-216ENST00000525293 RAB39AQ14964 217 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 ODF1Q14990 250 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 EFCAB2Q5VUJ9 269 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 PPP4R3AQ6IN85 833 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 GADL1Q6ZQY3 521 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 PRIMA1Q86XR5 153 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 Q8NA96 180 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 SIMC1Q8NDZ2 872 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 IL17RDQ8NFM7 739 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 CAGE1Q8TC20 777 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 SLC9A6Q92581 669 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 MRGPRX4Q96LA9 322 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 BBC3Q96PG8 261 aaPredicted RBP3.12□□□□□ -1.91
CD44-216ENST00000525293 AIFM2Q9BRQ8 373 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 PRDM13Q9H4Q3 707 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 RSAD1Q9HA92 442 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 PTGFRNQ9P2B2 879 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 LRIT1Q9P2V4 623 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 NIPSNAP3AQ9UFN0 247 aaPredicted RBP3.12□□□□□ -1.91
CD44-216ENST00000525293 SERPINB13Q9UIV8 391 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 DMTF1Q9Y222 760 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 CDYLQ9Y232 598 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 TNKSO95271 1327 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 WASHC2CQ9Y4E1 1318 aa3.12□□□□□ -1.91
CD44-216ENST00000525293 TRGV11A0A075B6L2 103 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 ALG1L2C9J202 215 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 SLC43A1O75387 559 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 CD1AP06126 327 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 CCND1P24385 295 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 SIM1P81133 766 aaPredicted RBP3.11□□□□□ -1.91
CD44-216ENST00000525293 FPGSQ05932 587 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 SF3B3Q15393 1217 aaKnown RBP3.11□□□□□ -1.91
CD44-216ENST00000525293 UAP1L1Q3KQV9 507 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 FLYWCH1Q4VC44 716 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 FBXO42Q6P3S6 717 aa3.11□□□□□ -1.91
CD44-216ENST00000525293 RD3Q7Z3Z2 195 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms