RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 RAB20Q9NX57 234 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.53■□□□□ 0.4
LSM1-204ENST00000522515 GOLGA6L3A6NEY3 463 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 F8W810 466 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 PODXLO00592 558 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 SLC11A1P49279 550 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 MYL6P60660 151 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 UBXN1Q04323 297 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 TRPC3Q13507 836 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 NR1I3Q14994 352 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 PTPN21Q16825 1174 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 SARM1Q6SZW1 724 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 C3orf58Q8NDZ4 430 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 LMO3Q8TAP4 145 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 DDX27Q96GQ7 796 aaKnown RBP17.53■□□□□ 0.4
LSM1-204ENST00000522515 UROC1Q96N76 676 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 PI4K2AQ9BTU6 479 aa17.53■□□□□ 0.4
LSM1-204ENST00000522515 XPO4Q9C0E2 1151 aaKnown RBP17.53■□□□□ 0.4
LSM1-204ENST00000522515 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.53■□□□□ 0.4
LSM1-204ENST00000522515 GBF1Q92538 1859 aa17.52■□□□□ 0.4
LSM1-204ENST00000522515 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.52■□□□□ 0.39
LSM1-204ENST00000522515 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.52■□□□□ 0.39
LSM1-204ENST00000522515 GTPBP10A4D1E9 387 aaKnown RBP17.52■□□□□ 0.39
LSM1-204ENST00000522515 NT5C1B-RDH14C9J2C7 533 aa17.52■□□□□ 0.39
LSM1-204ENST00000522515 NRP1O14786 923 aa17.52■□□□□ 0.39
LSM1-204ENST00000522515 ALDH2P05091 517 aa17.52■□□□□ 0.39
LSM1-204ENST00000522515 GALTP07902 379 aa17.52■□□□□ 0.39
LSM1-204ENST00000522515 BCAR1P56945 870 aa17.52■□□□□ 0.39
LSM1-204ENST00000522515 KCNMA1Q12791 1236 aa17.52■□□□□ 0.39
LSM1-204ENST00000522515 CETN1Q12798 172 aa17.52■□□□□ 0.39
LSM1-204ENST00000522515 FKBP15Q5T1M5 1219 aa17.52■□□□□ 0.39
LSM1-204ENST00000522515 SPOUT1Q5T280 376 aaKnown RBP17.52■□□□□ 0.39
LSM1-204ENST00000522515 EHBP1Q8NDI1 1231 aa17.52■□□□□ 0.39
LSM1-204ENST00000522515 TMEM175Q9BSA9 504 aa17.52■□□□□ 0.39
LSM1-204ENST00000522515 XYLT2Q9H1B5 865 aa17.52■□□□□ 0.39
LSM1-204ENST00000522515 GCNT4Q9P109 453 aa17.52■□□□□ 0.39
LSM1-204ENST00000522515 PRG3Q9Y2Y8 225 aaPredicted RBP17.52■□□□□ 0.39
LSM1-204ENST00000522515 SPTLC1O15269 473 aa17.51■□□□□ 0.39
LSM1-204ENST00000522515 B3GAT3O94766 335 aa17.51■□□□□ 0.39
LSM1-204ENST00000522515 KIF4AO95239 1232 aa17.51■□□□□ 0.39
LSM1-204ENST00000522515 ITGB1P05556 798 aa17.51■□□□□ 0.39
LSM1-204ENST00000522515 LINC00271P0C7V0 271 aa17.51■□□□□ 0.39
LSM1-204ENST00000522515 SLC9A1P19634 815 aa17.51■□□□□ 0.39
LSM1-204ENST00000522515 GSE1Q14687 1217 aa17.51■□□□□ 0.39
LSM1-204ENST00000522515 EXOC3L4Q17RC7 722 aa17.51■□□□□ 0.39
LSM1-204ENST00000522515 DCLRE1AQ6PJP8 1040 aa17.51■□□□□ 0.39
LSM1-204ENST00000522515 CD300LGQ6UXG3 332 aa17.51■□□□□ 0.39
LSM1-204ENST00000522515 GBP6Q6ZN66 633 aa17.51■□□□□ 0.39
LSM1-204ENST00000522515 LRRC52Q8N7C0 313 aa17.51■□□□□ 0.39
LSM1-204ENST00000522515 HPDLQ96IR7 371 aa17.51■□□□□ 0.39
LSM1-204ENST00000522515 GRPEL1Q9HAV7 217 aa17.51■□□□□ 0.39
LSM1-204ENST00000522515 FAN1Q9Y2M0 1017 aa17.51■□□□□ 0.39
LSM1-204ENST00000522515 R3HCC1Q9Y3T6 440 aaKnown RBP17.51■□□□□ 0.39
LSM1-204ENST00000522515 PCDHA11Q9Y5I1 949 aa17.51■□□□□ 0.39
LSM1-204ENST00000522515 KIAA1671Q9BY89 1806 aa17.5■□□□□ 0.39
LSM1-204ENST00000522515 SCN1AP35498 2009 aa17.5■□□□□ 0.39
LSM1-204ENST00000522515 ARHGEF15O94989 841 aa17.5■□□□□ 0.39
LSM1-204ENST00000522515 ASS1P00966 412 aaKnown RBP17.5■□□□□ 0.39
LSM1-204ENST00000522515 PON1P27169 355 aa17.5■□□□□ 0.39
LSM1-204ENST00000522515 PBX2P40425 430 aa17.5■□□□□ 0.39
LSM1-204ENST00000522515 ALDH7A1P49419 539 aaKnown RBP17.5■□□□□ 0.39
LSM1-204ENST00000522515 LILRA4P59901 499 aa17.5■□□□□ 0.39
LSM1-204ENST00000522515 APBA1Q02410 837 aa17.5■□□□□ 0.39
LSM1-204ENST00000522515 SYCP1Q15431 976 aa17.5■□□□□ 0.39
LSM1-204ENST00000522515 SGSM1Q2NKQ1 1148 aa17.5■□□□□ 0.39
LSM1-204ENST00000522515 SPOPLQ6IQ16 392 aa17.5■□□□□ 0.39
LSM1-204ENST00000522515 KCNT2Q6UVM3 1135 aa17.5■□□□□ 0.39
LSM1-204ENST00000522515 TMEM173Q86WV6 379 aaPredicted RBP17.5■□□□□ 0.39
LSM1-204ENST00000522515 HASPINQ8TF76 798 aa17.5■□□□□ 0.39
LSM1-204ENST00000522515 CLP1Q92989 425 aaKnown RBP17.5■□□□□ 0.39
LSM1-204ENST00000522515 ERGIC2Q96RQ1 377 aa17.5■□□□□ 0.39
LSM1-204ENST00000522515 PBX4Q9BYU1 374 aa17.5■□□□□ 0.39
LSM1-204ENST00000522515 TRIM5Q9C035 493 aa17.5■□□□□ 0.39
LSM1-204ENST00000522515 INTS2Q9H0H0 1204 aaKnown RBP17.5■□□□□ 0.39
LSM1-204ENST00000522515 YBX2Q9Y2T7 364 aaKnown RBP17.5■□□□□ 0.39
LSM1-204ENST00000522515 LAMA3Q16787 3333 aa17.5■□□□□ 0.39
LSM1-204ENST00000522515 LINC01553A4QN01 128 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 CA3P07451 260 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 LAG3P18627 525 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 ATICP31939 592 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 TAF6P49848 677 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 KLK7P49862 253 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 LRMPQ12912 555 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 MYO1EQ12965 1108 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 ZNF699Q32M78 642 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 TRIM65Q6PJ69 517 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 COLGALT1Q8NBJ5 622 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 BCL7CQ8WUZ0 217 aaPredicted RBP17.49■□□□□ 0.39
LSM1-204ENST00000522515 ZNF560Q96MR9 790 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 ZNF558Q96NG5 402 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 IMPG2Q9BZV3 1241 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 APOBEC3GQ9HC16 384 aaKnown RBP17.49■□□□□ 0.39
LSM1-204ENST00000522515 MARCH5Q9NX47 278 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 SIK3Q9Y2K2 1263 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 TMEM189-UBE2V1I3L0A0 370 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 CBFA2T2O43439 604 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 CLSTN1O94985 981 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 STAU1O95793 577 aaKnown RBP17.49■□□□□ 0.39
LSM1-204ENST00000522515 PNPLA4P41247 253 aa17.49■□□□□ 0.39
LSM1-204ENST00000522515 BRCC3P46736 316 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms