RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 CCDC112Q8NEF3 446 aa14.06□□□□□ -0.16
CPNE3-205ENST00000522240 CXorf38Q8TB03 319 aa14.06□□□□□ -0.16
CPNE3-205ENST00000522240 FAM84AQ96KN4 292 aa14.06□□□□□ -0.16
CPNE3-205ENST00000522240 PPP1R10Q96QC0 940 aaKnown RBP14.06□□□□□ -0.16
CPNE3-205ENST00000522240 DNAJC7Q99615 494 aa14.06□□□□□ -0.16
CPNE3-205ENST00000522240 NAA15Q9BXJ9 866 aaKnown RBP14.06□□□□□ -0.16
CPNE3-205ENST00000522240 ABHD10Q9NUJ1 306 aa14.06□□□□□ -0.16
CPNE3-205ENST00000522240 DPP3Q9NY33 737 aa14.06□□□□□ -0.16
CPNE3-205ENST00000522240 SIX4Q9UIU6 781 aa14.06□□□□□ -0.16
CPNE3-205ENST00000522240 TET1Q8NFU7 2136 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 ARL5CA6NH57 179 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 MEIS3P2A8K0S8 358 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 ENPP3O14638 875 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 NRDCO43847 1150 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 EFCAB14O75071 495 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 ITGB3P05106 788 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 TBXAS1P24557 533 aaPredicted RBP14.05□□□□□ -0.16
CPNE3-205ENST00000522240 GRIK3Q13003 919 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 TCTN1Q2MV58 587 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 SGSM1Q2NKQ1 1148 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 ZNF699Q32M78 642 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 GLRA4Q5JXX5 417 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 IQCEQ6IPM2 695 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 PHLDB3Q6NSJ2 640 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 PDXDC1Q6P996 788 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 LRRC52Q8N7C0 313 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 OR8K1Q8NGG5 319 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 SYN2Q92777 582 aaPredicted RBP14.05□□□□□ -0.16
CPNE3-205ENST00000522240 LPPQ93052 612 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 JAKMIP2Q96AA8 810 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 ZFP42Q96MM3 310 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 GAD1Q99259 594 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 STK33Q9BYT3 514 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 XYLT2Q9H1B5 865 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 KLK14Q9P0G3 267 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 PRKAG2Q9UGJ0 569 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 TUBGCP4Q9UGJ1 667 aa14.05□□□□□ -0.16
CPNE3-205ENST00000522240 ABHD14A-ACY1A0A1B0GW23 586 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.04□□□□□ -0.16
CPNE3-205ENST00000522240 ANO9A1A5B4 782 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 HOXA2O43364 376 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 THP07101 528 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 ITGB8P26012 769 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 LRPAP1P30533 357 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 POLR2BP30876 1174 aaKnown RBP14.04□□□□□ -0.16
CPNE3-205ENST00000522240 HNRNPH3P31942 346 aaKnown RBP14.04□□□□□ -0.16
CPNE3-205ENST00000522240 MFAP3P55082 362 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 ADKP55263 362 aaKnown RBP14.04□□□□□ -0.16
CPNE3-205ENST00000522240 JAM2P57087 298 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 MYL6P60660 151 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 RBP5P82980 135 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 APBA1Q02410 837 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 IKBKEQ14164 716 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 MEA1Q16626 185 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 GLB1LQ6UWU2 654 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 DEFB128Q7Z7B8 93 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 NPAS4Q8IUM7 802 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 ARHGEF19Q8IW93 802 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 LRRC8AQ8IWT6 810 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 RPUSD2Q8IZ73 545 aaKnown RBP14.04□□□□□ -0.16
CPNE3-205ENST00000522240 PPM1KQ8N3J5 372 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 RNF169Q8NCN4 708 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 GSTCDQ8NEC7 633 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 HELQQ8TDG4 1101 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 CPLX3Q8WVH0 158 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 VWCEQ96DN2 955 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 ZNF560Q96MR9 790 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 SPAG5Q96R06 1193 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 NIF3L1Q9GZT8 377 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 CXCL16Q9H2A7 254 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 FAM124BQ9H5Z6 455 aaPredicted RBP14.04□□□□□ -0.16
CPNE3-205ENST00000522240 NLRC4Q9NPP4 1024 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 DNAJC12Q9UKB3 198 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 PLAGL2Q9UPG8 496 aa14.04□□□□□ -0.16
CPNE3-205ENST00000522240 R3HCC1Q9Y3T6 440 aaKnown RBP14.04□□□□□ -0.16
CPNE3-205ENST00000522240 TDRD15B5MCY1 1934 aaKnown RBP14.03□□□□□ -0.16
CPNE3-205ENST00000522240 TTC3P53804 2025 aa14.03□□□□□ -0.16
CPNE3-205ENST00000522240 LRRC53A6NM62 1247 aa14.03□□□□□ -0.16
CPNE3-205ENST00000522240 F8VZ95 297 aa14.03□□□□□ -0.16
CPNE3-205ENST00000522240 RNF225M0QZC1 329 aaPredicted RBP14.03□□□□□ -0.16
CPNE3-205ENST00000522240 OFD1O75665 1012 aa14.03□□□□□ -0.16
CPNE3-205ENST00000522240 BAIAP3O94812 1187 aa14.03□□□□□ -0.16
CPNE3-205ENST00000522240 CST3P01034 146 aaPredicted RBP14.03□□□□□ -0.16
CPNE3-205ENST00000522240 KRT19P08727 400 aa14.03□□□□□ -0.16
CPNE3-205ENST00000522240 CSF2RAP15509 400 aa14.03□□□□□ -0.16
CPNE3-205ENST00000522240 PNPLA4P41247 253 aa14.03□□□□□ -0.16
CPNE3-205ENST00000522240 SCNN1GP51170 649 aa14.03□□□□□ -0.16
CPNE3-205ENST00000522240 PPIGQ13427 754 aaKnown RBP eCLIP14.03□□□□□ -0.16
CPNE3-205ENST00000522240 CUL2Q13617 745 aa14.03□□□□□ -0.16
CPNE3-205ENST00000522240 RAPGEF1Q13905 1077 aa14.03□□□□□ -0.16
CPNE3-205ENST00000522240 NAB2Q15742 525 aa14.03□□□□□ -0.16
CPNE3-205ENST00000522240 TSR1Q2NL82 804 aaKnown RBP14.03□□□□□ -0.16
CPNE3-205ENST00000522240 C9orf57Q5W0N0 161 aa14.03□□□□□ -0.16
CPNE3-205ENST00000522240 GJB7Q6PEY0 223 aa14.03□□□□□ -0.16
CPNE3-205ENST00000522240 RRAGAQ7L523 313 aa14.03□□□□□ -0.16
CPNE3-205ENST00000522240 URGCPQ8TCY9 931 aa14.03□□□□□ -0.16
CPNE3-205ENST00000522240 C18orf25Q96B23 403 aaPredicted RBP14.03□□□□□ -0.16
CPNE3-205ENST00000522240 TRIM44Q96DX7 344 aaPredicted RBP14.03□□□□□ -0.16
CPNE3-205ENST00000522240 PI4K2AQ9BTU6 479 aa14.03□□□□□ -0.16
CPNE3-205ENST00000522240 APOBEC3GQ9HC16 384 aaKnown RBP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms