RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 MYCT1Q8N699 235 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 TXNDC5Q8NBS9 432 aaKnown RBP8.89□□□□□ -0.99
LSM1-202ENST00000520286 MAML1Q92585 1016 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 TRIM43Q96BQ3 446 aaPredicted RBP8.89□□□□□ -0.99
LSM1-202ENST00000520286 PACSIN1Q9BY11 444 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 ENKD1Q9H0I2 346 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 KCNH6Q9H252 994 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 BRD9Q9H8M2 597 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 SMURF2Q9HAU4 748 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 PRDM16Q9HAZ2 1276 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 SERHLQ9NQF3 203 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 SLC23A1Q9UHI7 598 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 PCDHGB3Q9Y5G1 929 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 DGKBQ9Y6T7 804 aa8.89□□□□□ -0.99
LSM1-202ENST00000520286 LAMC3Q9Y6N6 1575 aa8.88□□□□□ -0.99
LSM1-202ENST00000520286 TCRBV7S2A1N4TA0A589 114 aa8.88□□□□□ -0.99
LSM1-202ENST00000520286 ETV2O00321 342 aaPredicted RBP8.88□□□□□ -0.99
LSM1-202ENST00000520286 KIAA0391O15091 583 aaKnown RBP8.88□□□□□ -0.99
LSM1-202ENST00000520286 ATP5JP18859 108 aa8.88□□□□□ -0.99
LSM1-202ENST00000520286 BLMHQ13867 455 aa8.88□□□□□ -0.99
LSM1-202ENST00000520286 PUM3Q15397 648 aaKnown RBP8.88□□□□□ -0.99
LSM1-202ENST00000520286 PRR16Q569H4 304 aa8.88□□□□□ -0.99
LSM1-202ENST00000520286 LDHAL6AQ6ZMR3 332 aa8.88□□□□□ -0.99
LSM1-202ENST00000520286 SEM1Q6ZVN7 128 aa8.88□□□□□ -0.99
LSM1-202ENST00000520286 RALYLQ86SE5 291 aaKnown RBP8.88□□□□□ -0.99
LSM1-202ENST00000520286 TXLNBQ8N3L3 684 aa8.88□□□□□ -0.99
LSM1-202ENST00000520286 ZNF527Q8NB42 609 aa8.88□□□□□ -0.99
LSM1-202ENST00000520286 PCSK9Q8NBP7 692 aaKnown RBP8.88□□□□□ -0.99
LSM1-202ENST00000520286 IQCDQ96DY2 449 aa8.88□□□□□ -0.99
LSM1-202ENST00000520286 GPHA2Q96T91 129 aa8.88□□□□□ -0.99
LSM1-202ENST00000520286 MRI1Q9BV20 369 aa8.88□□□□□ -0.99
LSM1-202ENST00000520286 MAF1Q9H063 256 aa8.88□□□□□ -0.99
LSM1-202ENST00000520286 AGO4Q9HCK5 861 aaKnown RBP8.88□□□□□ -0.99
LSM1-202ENST00000520286 CASS4Q9NQ75 786 aa8.88□□□□□ -0.99
LSM1-202ENST00000520286 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.88□□□□□ -0.99
LSM1-202ENST00000520286 CFAP97Q9P2B7 532 aa8.88□□□□□ -0.99
LSM1-202ENST00000520286 MYO1AQ9UBC5 1043 aa8.88□□□□□ -0.99
LSM1-202ENST00000520286 SH3D21A4FU49 640 aa8.87□□□□□ -0.99
LSM1-202ENST00000520286 PRSS29PA6NIE9 313 aa8.87□□□□□ -0.99
LSM1-202ENST00000520286 ARHGAP6O43182 974 aa8.87□□□□□ -0.99
LSM1-202ENST00000520286 ABHD16AO95870 558 aa8.87□□□□□ -0.99
LSM1-202ENST00000520286 THP07101 528 aa8.87□□□□□ -0.99
LSM1-202ENST00000520286 PI3P19957 117 aa8.87□□□□□ -0.99
LSM1-202ENST00000520286 FGFR2P21802 821 aa8.87□□□□□ -0.99
LSM1-202ENST00000520286 NPEPPSP55786 919 aa8.87□□□□□ -0.99
LSM1-202ENST00000520286 SSPNQ14714 243 aa8.87□□□□□ -0.99
LSM1-202ENST00000520286 KIF22Q14807 665 aa8.87□□□□□ -0.99
LSM1-202ENST00000520286 ZNF566Q969W8 418 aa8.87□□□□□ -0.99
LSM1-202ENST00000520286 SNX22Q96L94 193 aa8.87□□□□□ -0.99
LSM1-202ENST00000520286 GJB4Q9NTQ9 266 aa8.87□□□□□ -0.99
LSM1-202ENST00000520286 BAZ1BQ9UIG0 1483 aaKnown RBP8.86□□□□□ -0.99
LSM1-202ENST00000520286 C9orf118A6NHY6 69 aa8.86□□□□□ -0.99
LSM1-202ENST00000520286 CXorf49A8MYA2 514 aaPredicted RBP8.86□□□□□ -0.99
LSM1-202ENST00000520286 FFAR2O15552 330 aa8.86□□□□□ -0.99
LSM1-202ENST00000520286 TLR5O60602 858 aa8.86□□□□□ -0.99
LSM1-202ENST00000520286 SLC43A1O75387 559 aa8.86□□□□□ -0.99
LSM1-202ENST00000520286 GJB1P08034 283 aa8.86□□□□□ -0.99
LSM1-202ENST00000520286 EEF1GP26641 437 aaKnown RBP8.86□□□□□ -0.99
LSM1-202ENST00000520286 CAP1Q01518 475 aa8.86□□□□□ -0.99
LSM1-202ENST00000520286 MRPL49Q13405 166 aaKnown RBP8.86□□□□□ -0.99
LSM1-202ENST00000520286 NFYCQ13952 458 aa8.86□□□□□ -0.99
LSM1-202ENST00000520286 SLC44A4Q53GD3 710 aa8.86□□□□□ -0.99
LSM1-202ENST00000520286 FAM26FQ5R3K3 315 aa8.86□□□□□ -0.99
LSM1-202ENST00000520286 GGT6Q6P531 493 aa8.86□□□□□ -0.99
LSM1-202ENST00000520286 PAF1Q8N7H5 531 aa8.86□□□□□ -0.99
LSM1-202ENST00000520286 RABGGTAQ92696 567 aa8.86□□□□□ -0.99
LSM1-202ENST00000520286 NDC1Q9BTX1 674 aa8.86□□□□□ -0.99
LSM1-202ENST00000520286 MYLK2Q9H1R3 596 aa8.86□□□□□ -0.99
LSM1-202ENST00000520286 IL23AQ9NPF7 189 aa8.86□□□□□ -0.99
LSM1-202ENST00000520286 RLIMQ9NVW2 624 aa8.86□□□□□ -0.99
LSM1-202ENST00000520286 GTF2A1LQ9UNN4 478 aa8.86□□□□□ -0.99
LSM1-202ENST00000520286 NR2E1Q9Y466 385 aa8.86□□□□□ -0.99
LSM1-202ENST00000520286 THAP12O43422 761 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 PLA2G6O60733 806 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 CSTBP04080 98 aaKnown RBP8.85□□□□□ -0.99
LSM1-202ENST00000520286 GNAI2P04899 355 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 ANXA2P07355 339 aaKnown RBP8.85□□□□□ -0.99
LSM1-202ENST00000520286 GLDCP23378 1020 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 CCT5P48643 541 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 CTBP1Q13363 440 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 RAB32Q13637 225 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 ZNF568Q3ZCX4 644 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 ZNF529Q6P280 563 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 UBE3BQ7Z3V4 1068 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 FRMD5Q7Z6J6 570 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 ADGRE4PQ86SQ3 457 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 MICU3Q86XE3 530 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 ADGRG2Q8IZP9 1017 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 CARFQ8N187 725 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 SLC35B2Q8TB61 432 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 ADAMTS17Q8TE56 1095 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 TRIM63Q969Q1 353 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 ZNF518BQ9C0D4 1074 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 JKAMPQ9P055 326 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 PAXBP1Q9Y5B6 917 aa8.85□□□□□ -0.99
LSM1-202ENST00000520286 SKAP2O75563 359 aaPredicted RBP8.84□□□□□ -0.99
LSM1-202ENST00000520286 MT-ND5P03915 603 aa8.84□□□□□ -0.99
LSM1-202ENST00000520286 RARBP10826 455 aa8.84□□□□□ -0.99
LSM1-202ENST00000520286 ALDH9A1P49189 494 aa8.84□□□□□ -0.99
LSM1-202ENST00000520286 IRAK1P51617 712 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms