RNA–Protein interactions for RNA: ENST00000513143.5

PDPN-210, Transcript of podoplanin, humanhuman

TSL 1 (best) BASIC

Gene PDPN, Length 1,305 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-210ENST00000513143 GOLGA2P5Q9HBQ8 144 aa13.5□□□□□ -0.25
PDPN-210ENST00000513143 PLCB1Q9NQ66 1216 aa13.5□□□□□ -0.25
PDPN-210ENST00000513143 AGAP1Q9UPQ3 857 aa13.5□□□□□ -0.25
PDPN-210ENST00000513143 TNRC18O15417 2968 aaPredicted RBP13.49□□□□□ -0.25
PDPN-210ENST00000513143 ITIH6Q6UXX5 1313 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 H0YGN5 161 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 B4GALT3O60512 393 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 ZC3H11AO75152 810 aaKnown RBP eCLIP13.49□□□□□ -0.25
PDPN-210ENST00000513143 DDHD2O94830 711 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 GJB5O95377 273 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 STAU1O95793 577 aaKnown RBP13.49□□□□□ -0.25
PDPN-210ENST00000513143 ASS1P00966 412 aaKnown RBP13.49□□□□□ -0.25
PDPN-210ENST00000513143 KRT19P08727 400 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 CDC25BP30305 580 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 ATICP31939 592 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 KLK7P49862 253 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 MYL6P60660 151 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 HTRA4P83105 476 aaPredicted RBP13.49□□□□□ -0.25
PDPN-210ENST00000513143 RNASELQ05823 741 aaKnown RBP13.49□□□□□ -0.25
PDPN-210ENST00000513143 UPP1Q16831 310 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 SGSM1Q2NKQ1 1148 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 C9orf50Q5SZB4 431 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 FAM117BQ6P1L5 589 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 TRIM65Q6PJ69 517 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 ZNF280BQ86YH2 543 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 COLGALT2Q8IYK4 626 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 CMTR2Q8IYT2 770 aaKnown RBP13.49□□□□□ -0.25
PDPN-210ENST00000513143 LRRC43Q8N309 656 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 LRRC52Q8N7C0 313 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 TAF4BQ92750 862 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 XYLT2Q9H1B5 865 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 NRDE2Q9H7Z3 1164 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 VRTNQ9H8Y1 702 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 SIX2Q9NPC8 291 aa13.49□□□□□ -0.25
PDPN-210ENST00000513143 R3HCC1Q9Y3T6 440 aaKnown RBP13.49□□□□□ -0.25
PDPN-210ENST00000513143 PDE4DIPQ5VU43 2346 aa13.48□□□□□ -0.25
PDPN-210ENST00000513143 CASTOR2A6NHX0 329 aa13.48□□□□□ -0.25
PDPN-210ENST00000513143 PPEF2O14830 753 aa13.48□□□□□ -0.25
PDPN-210ENST00000513143 ATP2A2P16615 1042 aaKnown RBP13.48□□□□□ -0.25
PDPN-210ENST00000513143 PNPLA4P41247 253 aa13.48□□□□□ -0.25
PDPN-210ENST00000513143 CLCNKBP51801 687 aa13.48□□□□□ -0.25
PDPN-210ENST00000513143 SHHQ15465 462 aa13.48□□□□□ -0.25
PDPN-210ENST00000513143 WDR44Q5JSH3 913 aa13.48□□□□□ -0.25
PDPN-210ENST00000513143 SPECC1LQ69YQ0 1117 aa13.48□□□□□ -0.25
PDPN-210ENST00000513143 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.48□□□□□ -0.25
PDPN-210ENST00000513143 HERC6Q8IVU3 1022 aa13.48□□□□□ -0.25
PDPN-210ENST00000513143 HPDLQ96IR7 371 aa13.48□□□□□ -0.25
PDPN-210ENST00000513143 FAM193BQ96PV7 902 aaPredicted RBP13.48□□□□□ -0.25
PDPN-210ENST00000513143 YME1L1Q96TA2 773 aa13.48□□□□□ -0.25
PDPN-210ENST00000513143 TMEM175Q9BSA9 504 aa13.48□□□□□ -0.25
PDPN-210ENST00000513143 PI4K2AQ9BTU6 479 aa13.48□□□□□ -0.25
PDPN-210ENST00000513143 LSM14BQ9BX40 385 aaKnown RBP13.48□□□□□ -0.25
PDPN-210ENST00000513143 IMPG2Q9BZV3 1241 aa13.48□□□□□ -0.25
PDPN-210ENST00000513143 CWH43Q9H720 699 aa13.48□□□□□ -0.25
PDPN-210ENST00000513143 APOBEC3GQ9HC16 384 aaKnown RBP13.48□□□□□ -0.25
PDPN-210ENST00000513143 CACNG4Q9UBN1 327 aa13.48□□□□□ -0.25
PDPN-210ENST00000513143 INSL6Q9Y581 213 aa13.48□□□□□ -0.25
PDPN-210ENST00000513143 PODXLO00592 558 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 NOL4O94818 638 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 TAF6P49848 677 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 NOP14P78316 857 aaKnown RBP13.47□□□□□ -0.25
PDPN-210ENST00000513143 APBA1Q02410 837 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 MYO1EQ12965 1108 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 ZNF699Q32M78 642 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 PAN2Q504Q3 1202 aaKnown RBP13.47□□□□□ -0.25
PDPN-210ENST00000513143 FIGNQ5HY92 759 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 KLHDC7AQ5VTJ3 777 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 SPOPLQ6IQ16 392 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 PHLDB3Q6NSJ2 640 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 CCDC150Q8NCX0 1101 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 TATDN2Q93075 761 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 FAXDC2Q96IV6 333 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 RNPC3Q96LT9 517 aaKnown RBP13.47□□□□□ -0.25
PDPN-210ENST00000513143 PCMTD1Q96MG8 357 aaPredicted RBP13.47□□□□□ -0.25
PDPN-210ENST00000513143 ZNF560Q96MR9 790 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 NT5C1BQ96P26 610 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 PAAF1Q9BRP4 392 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 NUP58Q9BVL2 599 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 UBE2OQ9C0C9 1292 aaKnown RBP13.47□□□□□ -0.25
PDPN-210ENST00000513143 GANQ9H2C0 597 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 FAM207AQ9NSI2 230 aaPredicted RBP13.47□□□□□ -0.25
PDPN-210ENST00000513143 APEX2Q9UBZ4 518 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 DNAJB4Q9UDY4 337 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 FBXL5Q9UKA1 691 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 NUB1Q9Y5A7 615 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 GBF1Q92538 1859 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 KIAA1671Q9BY89 1806 aa13.47□□□□□ -0.25
PDPN-210ENST00000513143 TMEM189-UBE2V1I3L0A0 370 aa13.46□□□□□ -0.25
PDPN-210ENST00000513143 EPHB6O15197 1021 aa13.46□□□□□ -0.25
PDPN-210ENST00000513143 ALDH2P05091 517 aa13.46□□□□□ -0.25
PDPN-210ENST00000513143 UCHL3P15374 230 aa13.46□□□□□ -0.25
PDPN-210ENST00000513143 PAX3P23760 479 aa13.46□□□□□ -0.25
PDPN-210ENST00000513143 BMP8BP34820 402 aa13.46□□□□□ -0.25
PDPN-210ENST00000513143 LILRA4P59901 499 aa13.46□□□□□ -0.25
PDPN-210ENST00000513143 LRMPQ12912 555 aa13.46□□□□□ -0.25
PDPN-210ENST00000513143 BTG3Q14201 252 aaPredicted RBP13.46□□□□□ -0.25
PDPN-210ENST00000513143 SV2CQ496J9 727 aa13.46□□□□□ -0.25
PDPN-210ENST00000513143 DCLRE1AQ6PJP8 1040 aa13.46□□□□□ -0.25
PDPN-210ENST00000513143 CD300LGQ6UXG3 332 aa13.46□□□□□ -0.25
PDPN-210ENST00000513143 ARHGEF19Q8IW93 802 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms